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Califano, Andrea
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He, Jing
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Honig, Barry
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Shapira, Sagi
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Shen, Yufeng
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Systems Biology
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Biochemistry and Molecular Biophysics
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Biomedical Informatics
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Genetics and Development
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Pathology and Cell Biology
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Systems biology
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Bioinformatics
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Gene regulatory networks
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Biology
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Epigenetics
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Articles
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Theses
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Doctoral
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1.
Engineered bacteria for the modulation of intestinal physiology, inflammation, and behavior along the microbiome-gut-brain axis
Cusimano, Frank Anthony
2019
Theses
Nutrition
Systems biology
Psychobiology
Host-bacteria relationships
Gastrointestinal system--Microbiology
Microbiological synthesis
2.
Exploring Thymineless Death Using Systems Biology and Laboratory Evolution
Ketcham, Alexandra
2019
Theses
Microbiology
Biology--Classification
Systems biology
Thymidine
Cell death
3.
Meta-analysis of expression and methylation signatures indicates a stress-related epigenetic mechanism in multiple neuropsychiatric disorders
Zhu, Kaiyi; Ou Yang, Tai-Hsien; Dorie, Vincent Joseph; Zheng, Tian; Anastassiou, Dimitris
2019
Articles
Neurobehavioral disorders
Pathology
Epigenetics
Methylation
Stress (Psychology)--Physiological aspects
Systems biology
4.
Automated analysis of long-term grooming behavior in Drosophila using a k-nearest neighbors classifier
Qiao, Bing; Li, Chiyuan; Allen, Victoria Wing; Shirasu-Hiza, Mimi M.; Syed, Sheyum
2018
Articles
Drosophila
Neurosciences
Systems biology
Circadian rhythms
Grooming behavior in animals
5.
Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma
Pan, Yuan; Duron, Christina; Bush, Erin C.; Ma, Yu; Sims, Peter A.; Gutmann, David H.; Radunskaya, Ami; Hardin, Johanna
2018
Articles
Gliomas
Gene regulatory networks
Gene expression
System analysis
Systems biology
Mathematics
6.
Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry
Freddolino, Peter L.; Yang, Jamie Siyu; Momen-Roknabadi, Amir; Tavazoie, Saeed
2018
Articles
Gene regulatory networks
Systems biology
Gene expression
Stochastic processes
Epigenetics
7.
Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding
Rao, Satyanarayan; Chiu, Tsu-Pei; Kribelbauer, Judith F.; Mann, Richard S.; Bussemaker, Harmen J.; Rohs, Remo
2018
Articles
DNA--Methylation
Epigenetics
DNA-binding proteins
Systems biology
8.
Systematic reconstruction of autism biology from massive genetic mutation profiles
Luo, Weijun; Zhang, Chaolin; Jiang, Yong-hui; Brouwer, Cory R.
2018
Articles
Mutation (Biology)
Developmental genetics
Autism--Research
Autism spectrum disorders--Genetic aspects
Systems biology
9.
Understand Biology Using Single Cell RNA-Sequencing
Ding, Hongxu
2018
Theses
Biology
Nucleotide sequence
Systems biology
10.
Accelerated parallel algorithm for gene network reverse engineering
He, Jing; Zhou, Zhou; Reed, Michael K.; Califano, Andrea
2017
Articles
Parallel programming (Computer science)
Gene regulatory networks
Gene expression--Data processing
Systems biology
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