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1. Machine Learning Applications in Proteins: Interaction Prediction and Structure Prediction

Sun, Mengzhen
2021
Theses
ChemistryMachine learningAmino acid sequenceProtein-protein interactions

2. Resonance-energy-transfer-based fluorescence imaging and free energy perturbation calculation

Xu, Fang
2018
Theses
Chemistry, Physical and theoreticalProtein-protein interactionsFluorescenceEnergy transferBiochemistry

3. Engineering Biomolecular Interfaces for Applications in Biotechnology

Bulutoglu, Beyza
2017
Theses
BiotechnologyProtein-protein interactionsProtein engineeringEnzymesPeptidesBiomoleculesChemical engineeringBiomedical engineering

4. A computational interactome and functional annotation for the human proteome

Garzon Canas, Jose I.; Deng, Lei; Murray, Diana; Shapira, Sagi; Petrey, Donald S.; Honig, Barry
2016
Articles
Computational biologyProteomicsProtein-protein interactionsSystems biology

5. Autophagy-linked FYVE protein mediates the turnover of mutant huntingtin and modifies pathogenesis in mouse models of Huntington’s disease

Fox, Leora Mestel
2016
Theses
Nervous system--DegenerationHuntington's diseaseProtein-protein interactionsNeurosciences

6. Interaction of Human Laminin Receptor with Sup35, the [PSI+] Prion-Forming Protein from S. cerevisiae: A Yeast Model for Studies of LamR Interactions with Amyloidogenic Proteins

Pampeno, Christine; Derkatch, Irina L.; Meruelo, Daniel
2014
Articles
Protein-protein interactionsPrion diseasesYeastBiochemistry

7. Towards the integration of structural and systems biology: structure-based studies of protein-protein interactions on a genome-wide scale

Zhang, Qiangfeng Cliff
2012
Theses
BioinformaticsBiophysicsSystems biologyProtein-protein interactionsGenomes

8. PathBLAST: a tool for alignment of protein interaction networks

Kelley, Brian P.; Yuan, Bingbing; Sharan, Roded; Lewitter, Fran; Stockwell, Brent R.; Ideker, Trey
2004
Articles
GenomicsProtein-protein interactionsGenetics

9. Conserved pathways within bacteria and yeast as revealed by global protein network alignment

Kelly, Brian P.; Sharan, Roded; Karp, Richard; Sittler, Taylor; Root, David; Stockwell, Brent R.; Ideker, Trey
2003
Articles
Saccharomyces cerevisiaeHelicobacter pyloriMolecular biologyProtein-protein interactionsBiology