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Piana, Stefano
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Shaw, David Elliot
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Alcott, Brett Eugene
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Berne, Bruce J.
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Cao, Yi
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Biochemistry and Molecular Biophysics
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Subject
Molecular dynamics
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Biochemistry
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Theses
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Articles
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Degree Level
Doctoral
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2019
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1.
Biomolecular NMR spectroscopy: Application to the study of the piRNA-pathway protein GTSF1, and backbone and side-chain spin relaxation methods development
O'Brien, Paul
2019
Theses
Biophysics
Biochemistry
Nuclear magnetic resonance spectroscopy
Proteins--Structure
Molecular dynamics
2.
Developing a molecular dynamics force field for both folded and disordered protein states
Robustelli, Paul; Piana, Stefano; Shaw, David Elliot
2018
Articles
Molecular dynamics
Computer simulation
Proteins
Protein folding
3.
Phase Diagrams of Water Confined by Graphene and Graphene Oxide
Gao, Zhenghan
2018
Theses
Physics
Graphene
Molecular dynamics
Water
Phase diagrams
Cavitation
4.
RNA force field with accuracy comparable to state-of-the-art protein force fields
Tan, Dazhi; Piana, Stefano; Dirks, Robert M.; Shaw, David Elliot
2018
Articles
Biochemistry
Biophysics
RNA-protein interactions
Molecular dynamics
Nucleic acids
5.
Directional mechanical stability of Bacteriophage φ29 motor’s 3WJ-pRNA: Extraordinary robustness along portal axis
Xu, Zhonghe; Sun, Yang; Weber, Jeffrey K.; Cao, Yi; Wang, Wei; Jasinski, Daniel; Guo, Peixuan; Zhou, Ruhong; Li, Jingyuan
2017
Articles
Biophysics
Chemistry
Bacteriophages
Molecular dynamics
Atomic force microscopy
Stability
6.
How and when does an anticancer drug leave its binding site?
Tiwary, Pratyush; Mondal, Jagannath; Berne, Bruce J.
2017
Articles
Biochemistry
Molecular dynamics
Antineoplastic agents
Drugs
Chemical engineering
Binding sites (Biochemistry)
7.
Molecular Dynamics Simulations of Microtubule-associated protein 1A/1B-light chain 3 (LC3) and its membrane associated form(LC3-II)
Mathew, Shyno
2017
Theses
Chemical engineering
Molecular biology
Bioinformatics
Autophagic vacuole
Molecular dynamics
8.
Nanoscale Electrical and Coarse-grained Molecular Dynamics Studies of Influenza Hemagglutinin-mediated Membrane Fusion Pores
Alcott, Brett Eugene
2017
Theses
Biophysics
Biochemistry
Virology
Molecular dynamics
Membrane fusion
9.
Studies of Polymers, Active Colloids, and Proteins
Tung, Clarion K.
2016
Theses
Colloids
Proteins
Molecular dynamics
Protein folding
Polymers
Chemistry
Physics
Microphysics
10.
Understanding complex biomolecular systems through the synergy of molecular dynamics simulations, NMR spectroscopy and X-Ray crystallography
Zeiske, Tim
2016
Theses
Molecular dynamics--Simulation methods
Molecular dynamics--Computer simulation
Nuclear magnetic resonance spectroscopy
Biomolecules--Computer simulation
X-ray crystallography
Macromolecules--Structure
Molecular dynamics
Biophysics
Biochemistry
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