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1. Aberrantly Expressed CeRNAs Account for Missing Genomic Variability of Cancer Genes via MicroRNA-Mediated Interactions

Chiu, Hua-Sheng
2014
Theses
CarcinogenesisOncogenesBioinformaticsRNABiology--ClassificationGenetics

2. Analysis of trans eSNPs infers regulatory network architecture

Kreimer, Anat
2014
Theses
Bioinformatics

3. A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data

Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong
2014
Articles
Computational biologyGenomics--Data processingBioinformatics

4. Data-driven discovery of seasonally linked diseases from an Electronic Health Records system

Melamed, Rachel; Khiabanian, Hossein; Rabadan, Raul
2014
Articles
Diseases--Seasonal variationsBioinformatics

5. Early post-contrast T1 mapping yields maximal discriminatory capacity for detection of cardiac amyloid - influence of temporal T1 differences on MOLLI imaging

Cooper, Mitchell; Nguyen, Thanh; Maurer, Mathew; Landau, Heather; Kim, Jiwon; Gojraty, Sattar; Dutruel, Silvina; Prince, Martin; Wang, Yi; Weinsaft, Jonathan
2014
Articles
AmyloidosisMyocardium--DiseasesBioinformatics

6. Estimating heritability of drug-induced liver injury from common variants and implications for future study designs

Overby, Casey Lynnette; Hripcsak, George M.; Shen, Yufeng
2014
Articles
Human genome--ResearchLiver--Wounds and injuriesDrugs--Side effectsHereditySystems biologyBioinformatics

7. Heterogeneity and Context-Specificity in Biological Systems

Litvin, Oren
2014
Theses
BiologyBioinformaticsGenetics—ResearchBacterial diversity--Genetic aspectsGenetics--Mathematical models

8. Identification of microRNA Biogenesis Regulators and Activity Modulators

Chung, Wei-Jen
2014
Theses
Cancer--Genetic aspectsMetastasisGenetic regulationRNABioinformaticsMolecular biology

9. Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information

Giorgi, Federico M.; Lopez, Gonzalo; Woo, Jung H.; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh
2014
Articles
Gene expressionGenetic algorithmsTranscription factorsBioinformaticsGeneticsMolecular biology

10. Large-scale Functional Connectivity in the Human Brain Reveals Fundamental Mechanisms of Cognitive, Sensory and Emotion Processing in Health and Psychiatric Disorders

Pantazatos, Spiro
2014
Theses
NeurosciencesPsychobiologyBioinformaticsHippocampus (Brain)PerceptionCognitionAutismPrefrontal cortexCerebellum

11. Learning from cadherin structures and sequences: affinity determinants and protein architecture

Felsovalyi, Klara
2014
Theses
Protein bindingCadherinsBiochemistryBioinformaticsBiophysics

12. Presence of early CKD-related metabolic complications predict progression of stage 3 CKD: a case-controlled study

Chase, Herbert; Hirsch, Jamie; Mohan, Sumit; Rao, Maya K.; Radhakrishnan, Jai
2014
Articles
MedicineBioinformatics

13. PSEUDOMARKER 2.0: efficient computation of likelihoods using NOMAD

Gertz, Edward; Hiekkalinna, Tero; Digabel, Sébastien; Audet, Charles; Terwilliger, Joseph D.; Schäffer, Alejandro
2014
Articles
SoftwareBioinformatics

14. Redundancy-Aware Topic Modeling for Patient Record Notes

Cohen, Raphael; Aviram, Iddo; Elhadad, Michael; Elhadad, Noemie
2014
Articles
BioinformaticsMedical records--Data processingData miningMedical records

15. Regularized EM algorithm for sparse parameter estimation in nonlinear dynamic systems with application to gene regulatory network inference

Jia, Bin; Wang, Xiaodong
2014
Articles
Gene regulatory networksExpectation-maximization algorithmsBioinformatics

16. Structure-Based Genome Scale Function Prediction and Reconstruction of the Mycobacterium tuberculosis Metabolic Network

Konate, Mariam
2014
Theses
Bioinformatics

17. Transcriptome reconstruction and annotation of cynomolgus and African green monkey

Lee, Albert Kim; Khiabanian, Hossein; Kugelman, Jeffrey; Elliott, Oliver T.; Nagle, Elyse; Yu, Guo-Yun; Warren, Travis; Palacios, Gustavo; Rabadan, Raul
2014
Articles
BioinformaticsGenetics

18. Viral diversity and clonal evolution from unphased genomic data

Khiabanian, Hossein; Carpenter, Zachary; Kugelman, Jeffrey; Chan, Joseph; Trifonov, Vladimir; Nagle, Elyse; Warren, Travis; Iversen, Patrick; Bavari, Sina; Palacios, Gustavo; Rabadan, Raul
2014
Articles
GenomicsCytologyBioinformatics

19. viSNE and Wanderlust, two algorithms for the visualization and analysis of high-dimensional single-cell data

Amir, El-ad David
2014
Theses
ImmunologyBioinformatics