1. Generative Models for Synthetic Biology Blazejewski, Tomasz 2020 Theses BioinformaticsBiology--ClassificationMolecular biologySynthetic biologyMachine learningAmino acid sequence
2. The autophagosomal perspective: Tissue-specificity and cell-specificity of the autophagic response to starvation in vivo Yang, Young Joo 2020 Theses Molecular biologyBioinformaticsVeterinary medicineAutophagic vacuoles
3. Analysis of Oncogenic Signal Transduction with Application to KRAS Signaling Pathways Broyde, Joshua 2018 Theses BioinformaticsBiometryMolecular biologyCancer--Molecular aspectsCellular signal transductionOncology
4. Regulatory logic of cellular diversity in the nervous system Closser, Michael Edward 2018 Theses Molecular biologyNeurosciencesBioinformaticsNervous systemGene expressionCellular control mechanisms
5. Molecular Dynamics Simulations of Microtubule-associated protein 1A/1B-light chain 3 (LC3) and its membrane associated form(LC3-II) Mathew, Shyno 2017 Theses Chemical engineeringMolecular biologyBioinformaticsAutophagic vacuoleMolecular dynamics
6. Global Survey of Cell Death Mechanisms Reveals Metabolic Regulation of GPX4-Dependent Ferroptosis Shimada, Kencihi 2015 Theses HomeostasisMetabolismBioinformaticsPharmacologyCell deathMolecular biology
7. Reconstruction of novel transcription factor regulons through inference of their binding sites Elmas, Abdulkadir; Wang, Xiaodong; Samoilov, Michael S. 2015 Articles Comparative genomicsBioinformaticsGenomics--Data processingComputational biologyTranscription factorsElectrical engineeringGeneticsMolecular biologyMathematics
8. Transcriptional States and microRNA Regulation of Adult Neural Stem Cells DeLeo, Annina 2015 Theses Molecular biologyNeurosciencesBioinformatics
9. Identification of microRNA Biogenesis Regulators and Activity Modulators Chung, Wei-Jen 2014 Theses Cancer--Genetic aspectsMetastasisGenetic regulationRNABioinformaticsMolecular biology
10. Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information Giorgi, Federico M.; Lopez, Gonzalo; Woo, Jung H.; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh 2014 Articles Gene expressionGenetic algorithmsTranscription factorsBioinformaticsGeneticsMolecular biology
11. Ensemble of Gene Signatures Identifies Novel Biomarkers in Colorectal Cancer Activated through PPARγ and TNFα Signaling Pagnotta, Stefano Maria; Laudanna, Carmelo; Pancione, Massimo; Sabatino, Lina; Votino, Carolina; Remo, Andrea; Cerulo, Luigi; Zoppoli, Pietro; Manfrin, Erminia; Colantuoni, Vittorio; Ceccarelli, Michele 2013 Articles Biochemical markersColon (Anatomy)--CancerGene expressionMolecular biologyBioinformaticsOncology
12. Maximum parsimony xor haplotyping by sparse dictionary selection Elmas, Abdulkadir; Jajamovich, Guido H.; Wang, Xiaodong 2013 Articles Biometry--ResearchBioinformatics--MethodologyGenomics--Data processingGenetics—ResearchGeneticsBioinformaticsMolecular biology
13. Quantifying Pathogen Surveillance Using Temporal Genomic Data Chan, Joseph Minhow; Rabadan, Raul 2013 Articles BioinformaticsMolecular biologyCommunicable diseasesGenetics
14. The COMBREX Project: Design, Methodology, and Initial Results Anton, Brian P.; Chang, Yi-Chien; Brown, Peter; Choi, Han-Pil; Faller, Lina L.; Guleria, Jyotsna; Hu, Zhenjun; Klitgord, Niels; Levy-Moonshine, Ami; Maksad, Almaz; Mazumdar, Varun; McGettrick, Mark; Osmani, Lais; Pokrzywa, Revonda; Rachlin, John; Swaminathan, Rajeswari; Allen, Benjamin; Housman, Genevieve; Monahan, Caitlin; Rochussen, Krista; Tao, Kevin; Bhagwat, Ashok S.; Brenner, Steven E.; Columbus, Linda; de Crécy-Lagard, Valérie; Ferguson, Donald; Fomenkov, Alexey; Gadda, Giovanni; Morgan, Richard D.; Osterman, Andrei L.; Rodionov, Dmitry A.; Rodionova, Irina A.; Rudd, Kenneth E.; Söll, Dieter; Spain, James; Xu, Shuang-yong; Bateman, Alex; Blumenthal, Robert M.; Bollinger, J. Martin; Chang, Woo-Suk; Ferrer, Manuel; Friedberg, Iddo; Galperin, Michael Y.; Gobeill, Julien; Haft, Daniel; Hunt, John F.; Karp, Peter; Klimke, William; Krebs, Carsten; Macelis, Dana; Madupu, Ramana; Martin, Maria J.; Miller, Jeffrey H.; O'Donovan, Claire; Palsson, Bernhard; Ruch, Patrick; Setterdahl, Aaron; Sutton, Granger; Tate, John; Yakunin, Alexander; Tchigvintsev, Dmitri; Plata, German Alonso; Hu, Jie; Greiner, Russell; Horn, David; Sjölander, Kimmen; Salzberg, Steven L.; Vitkup, Dennis; Letovsky, Stanley; Segrè, Daniel; DeLisi, Charles; Roberts, Richard J.; Steffen, Martin; Kasif, Simon 2013 Articles Nucleotide sequenceGenomics--Data processingMicrobial proteinsMolecular biologyMicrobiologyBioinformatics