1. 3D Pharmacophoric Similarity improves Multi Adverse Drug Event Identification in Pharmacovigilance Vilar Varela, Santiago; Tatonetti, Nicholas P.; Hripcsak, George M. 2015 Articles Drugs--Side effectsMedical careBioinformaticsMedicine
2. ABC Transporters and the Proteasome Complex Are Implicated in Susceptibility to Stevens–Johnson Syndrome and Toxic Epidermal Necrolysis across Multiple Drugs Nicoletti, Paola; Bansal, Mukesh; Lefebvre, Celine; Guarnieri, Paolo; Shen, Yufeng; Pe’er, Itsik; Califano, Andrea; Floratos, Aristidis 2015 Articles Drugs--Side effectsATP-binding cassette transportersGene expressionGenetic regulationApoptosisToxic epidermal necrolysisBiology--ClassificationBioinformaticsGenetics
3. A classification-based framework for predicting and analyzing gene regulatory response Kundaje, Anshul; Middendorf, Manuel; Wiggins, Chris H.; Shah, Mihir; Freund, Yoav; Leslie, Christina 2006 Articles BioinformaticsGenetics
4. A haplotype inference algorithm for trios based on deterministic sampling Wang, Xiaodong; Anastassiou, Dimitris; Iliandis, Alexandros; Watkinson, John 2010 Articles GeneticsBioinformatics
5. A method to identify differential expression profiles of time-course gene data with Fourier transformation Kim, Jaehee; Ogden, Robert T.; Kim, Haseong 2013 Articles Gene expression--Data processingGenetics--Data processingFourier analysisBioinformaticsGene expressionGeneticsBiology
6. A negative selection heuristic to predict new transcriptional targets Cerulo, Luigi; Paduano, Vincenzo; Zoppoli, Pietro; Ceccarelli, Michele 2013 Articles BioinformaticsComputer science
7. An event-related potential examination of contour integration deficits in schizophrenia Butler, Pamela D.; Abeles, Ilana Y.; Silverstein, Steven M.; Dias, Elisa C.; Weiskopf, Nicole Gray; Calderone, Daniel J.; Sehatpour, Pejman 2013 Articles PsychologyBioinformaticsPsychobiology
8. A New Approach to Spatial Covariance Modeling of Functional Brain Imaging Data: Ordinal Trend Analysis Habeck, Christian G.; Krakauer, John W.; Ghez De Castelnvovo, Claude; Sackeim, Harold A.; Eidelberg, David; Stern, Yaakov; Moeller, James R. 2005 Articles CognitionCognitive scienceCognition--MeasurementDiagnostic imagingBrain--ImagingNeurosciencesBioinformatics
9. APG: an Active Protein-Gene Network Model to Quantify Regulatory Signals in Complex Biological Systems Wang, Jiguang; Sun, Yidan; Zheng, Si; Zhang, Xiang-Sun; Zhou, Huarong; Chen, Luonan 2013 Articles BiometryBioinformatics
10. ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context Margolin, Adam A.; Nemenman, Ilya; Basso, Katia; Wiggins, Chris H.; Stolovitzky, Gustavo Alejandro; Favera, Riccardo Dalla; Califano, Andrea 2006 Articles BioinformaticsCytology
11. A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2014 Articles Computational biologyGenomics--Data processingBioinformatics
12. BAMarray™: Java software for Bayesian analysis of variance for microarray data Ishwaran, Hemant; Rao, J. Sunil; Kogalur, Udaya B. 2006 Articles DNA microarrays--Data processingJava (Computer program language)BioinformaticsBayesian statistical decision theoryStatisticsInformation technology
13. Bayesian estimation of scaled mutation rate under the coalescent: a sequential Monte Carlo approach Ogundijo, Oyetunji Enoch; Wang, Xiaodong 2017 Articles BioinformaticsBayesian statistical decision theoryMonte Carlo methodGenealogyGenetics
14. Bayesian Multiple-Instance Motif Discovery with BAMBI: Inference of Recombinase and Transcription Factor Binding Sites Jajamovich, Guido H.; Wang, Xiaodong; Arkin, Adam P.; Samoilov, Michael S. 2011 Articles Bioinformatics
15. BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data Saal, Lao H.; Troein, Carl; Vallon-Christersson, Johan; Gruvberger, Sofia; Borg, Åke; Peterson, Carsten 2002 Articles BioinformaticsDNA microarraysCytologyGenetics
16. BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features Tsai, Richard; Chou, Wen-Chi; Su, Ying-Shan; Lin, Yu-Chun; Sung, Cheng-Lung; Dai, Hong-Jie; Yeh, Irene; Ku, Wei; Sung, Ting-Yi; Hsu, Wen-Lian 2007 Articles Entropy (Information theory)--Mathematical modelsBiomedical engineering--ResearchBioinformaticsBiomedical engineering
17. Bos taurus genome assembly Liu, Yue; Qin, Xiang; Song, Xing-Zhi; Jiang, Huaiyang; Shen, Yufeng; Durbin, K James; Lien, Sigbjørn; Kent, Matthew; Sodeland, Marte; Ren, Yanru; Zhang, Lan; Sodergren, Erica; Havlak, Paul; Worley, Kim; Weinstock, George; Gibbs, Richard 2009 Articles BioinformaticsGenetics
18. Cartographic Analysis of Antennas and Towers: A Novel Approach to Improving the Implementation and Data Transmission of mHealth Tools on Mobile Networks Brown III, William; Ibitoye, Mobolaji Omowumi; Bakken, Suzanne R.; Schnall, Rebecca; Balán, Iván C.; Frasca, Timothy Joel; Carballo-Diéguez, Alex 2015 Articles Medical careBioinformaticsBiomedical engineeringWireless communication systems in medical careMedicine
19. Centroid based clustering of high throughput sequencing reads based on n-mer counts Solovyov, Alexander; Lipkin, W. Ian 2013 Articles Sequence alignment (Bioinformatics)BioinformaticsBioinformatics--MethodologyComputational biologyBiology
20. Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data Feng, Huijuan; Li, Tingting; Zhang, Xuegong 2018 Articles Prostate--CancerGene expressionRNA splicingProtein kinasesGenomicsBioinformatics