1. Enhanced and controlled chromatin extraction from FFPE tissues and the application to ChIP-seq Zhong, Jian; Ye, Zhenqing; Clark, Chad R.; Lenz, Samuel W.; Nguyen, Justin H.; Yan, Huihuang; Robertson, Keith D.; Farrugia, Gianrico; Zhang, Zhiguo; Ordog, Tamas; Lee, Jeong-Heon 2019 Articles ChromatinEpigeneticsDiseases--Causes and theories of causationTissues
2. Live-cell single-molecule dynamics of PcG proteins imposed by the DIPG H3.3K27M mutation Tatavosian, Roubina; Duc, Huy Nguyen; Huynh, Thao Ngoc; Fang, Dong; Schmitt, Benjamin; Shi, Xiaodong; Deng, Yiming; Phiel, Christopher; Yao, Tingting; Zhang, Zhiguo; Wang, Haobin; Ren, Xiaojun 2018 Articles Brain--TumorsEpigeneticsBrain--Cancer--Molecular aspectsCancer
3. Epigenetic Inactivation of TRAIL Decoy Receptors at 8p12-21.3 Commonly Deleted Region Confers Sensitivity to Apo2L/TRAIL-Cisplatin Combination Therapy in Cervical Cancer Narayan, Gopeshwar; Xie, Dongxu; Ishdorj, Ganchimeg; Scotto, Luigi; Mansukhani, Mahesh M.; Pothuri, Bhavana; Wright, Jason D.; Kaufmann, Andreas; Schneider, Achim; Arias-Pulido, Hugo; Vundavalli, Murty V. 2016 Articles EpigeneticsGeneticsCervix uteri--CancerCervix uteri--Cancer--TreatmentCarcinogenesis
4. Trans effects of chromosome aneuploidies on DNA methylation patterns in human Down syndrome and mouse models Mendioroz, Maite; Do, Catherine; Jiang, Xiaoling; Liu, Chunhong; Darbary, Huferesh; Lang, Charles F.; Lin, John; Thomas, Anna; Abu-Amero, Sayeda; Stanier, Philip; Temkin, Alexis; Yale, Alexander; Liu, Meng-Min; Li, Yang; Salas, Martha C.; Kerkel, Kristi; Capone, George; Silverman, Wayne; Yu, Y. Eugene; Moore, Gudrun; Wegiel, Jerzy; Tycko, Benjamin 2015 Articles EpigeneticsChromosomesDown syndromeGeneticsBiomechanics
5. PCDH10 Promoter Hypermethylation is Frequent in most Histologic Subtypes of Mature Lymphoid Malignancies and Occurs Early in Lymphomagenesis Narayan, Gopeshwar; Xie, Dongxu; Freddy, Allen J.; Ishdorj, Ganchimeg; Do, Catherine; Satwani, Prakash; Liyanage, Hema; Clark, Lorraine N.; Kisselev, Sergey; Nandula, Subhadra; Scotto, Luigi; Alobeid, Bachir; Savage, David G.; Tycko, Benjamin; O’Connor, Owen Anthony; Bhagat, Govind; Vundavalli, Murty V. 2013 Articles LymphomasCarcinogenesisPromoters (Genetics)MethylationEpigenetics
6. Promoter Methylation-Mediated Inactivation of PCDH10 in Acute Lymphoblastic Leukemia Contributes to Chemotherapy Resistance Narayan, Gopeshwar; Freddy, Allen J.; Xie, Dongxu; Liyanage, Hema; Clark, Lorraine N.; Kisselev, Sergey; Kang, Ji Un; Nandula, Subhadra; McGuinn, Catherine; Subramaniyam, Shivakumar; Alobeid, Bachir; Satwani, Prakash; Savage, David G.; Vundavalli, Murty V. 2011 Articles EpigeneticsLymphoblastic leukemiaPromoters (Genetics)MethylationDrug resistance in cancer cells
7. Promoter hypermethylation-mediated inactivation of multiple Slit-Robo pathway genes in cervical cancer progression Narayan, Gopeshwar; Goparaju, Chandra; Arias-Pulido, Hugo; Kaufmann, Andreas; Schneider, Achim; Dürst, Matthias; Mansukhani, Mahesh M.; Pothuri, Bhavana; Vundavalli, Murty V. 2006 Articles EpigeneticsPrecancerous conditionsCervix uteri--CancerOncologyBiology
8. Genomic Profiling Maps Loss of Heterozygosity and Defines the Timing and Stage Dependence of Epigenetic and Genetic Events in Wilms’ Tumors Yuan, Eric; Li, Chi-Ming; Yamashiro, Darrell J.; Kandel, Jessica J.; Thaker, Harshwardhan; Vundavalli, Murty V.; Tycko, Benjamin 2005 Articles GenomicsGeneticsEpigeneticsNephroblastoma
9. Promoter Hypermethylation of FANCF: Disruption of Fanconi Anemia-BRCA Pathway in Cervical Cancer Narayan, Gopeshwar; Arias-Pulido, Hugo; Nandula, Subhadra; Basso, Katia; Sugirtharaj, Dorcas D.; Vargas, Hernan; Mansukhani, Mahesh M.; Villella, Jeannine; Meyer, Larissa; Schneider, Achim; Gissmann, Lutz; Dürst, Matthias; Pothuri, Bhavana; Vundavalli, Murty V. 2004 Articles EpigeneticsGenomicsCervix uteri--CancerFanconi's anemiaBRCA genes
10. Genetic analysis identifies putative tumor suppressor sites at 2q35–q36.1 and 2q36.3–q37.1 involved in cervical cancer progression Narayan, Gopeshwar; Arias-Pulido, Hugo; Koul, Sanjay; Lu, Xin-Yan; Harris, Charles P.; Yeh, Y. Albert; Vargas, Hernan; Posso, Hector; Terry, Mary Beth; Gissmann, Lutz; Schneider, Achim; Mansukhani, Mahesh M.; Rao, Pulivarthi; Vundavalli, Murty V. 2003 Articles GeneticsEpigeneticsCervix uteri--CancerHuman chromosome 2Comparative genomic hybridizationGene amplification