1. Elucidating synergistic dependencies in lung adenocarcinoma by proteome-wide signaling-network analysis Bansal, Mukesh; He, Jing; Peyton, Michael; Kustagi, Manjunath; Iyer, Archana; Comb, Michael; White, Michael; Minna, John D.; Califano, Andrea 2019 Articles AdenocarcinomaMolecular biologyLungs--Cancer--Molecular aspectsProteomics
2. Enhanced and controlled chromatin extraction from FFPE tissues and the application to ChIP-seq Zhong, Jian; Ye, Zhenqing; Clark, Chad R.; Lenz, Samuel W.; Nguyen, Justin H.; Yan, Huihuang; Robertson, Keith D.; Farrugia, Gianrico; Zhang, Zhiguo; Ordog, Tamas; Lee, Jeong-Heon 2019 Articles ChromatinEpigeneticsDiseases--Causes and theories of causationTissues
3. Live-cell single-molecule dynamics of PcG proteins imposed by the DIPG H3.3K27M mutation Tatavosian, Roubina; Duc, Huy Nguyen; Huynh, Thao Ngoc; Fang, Dong; Schmitt, Benjamin; Shi, Xiaodong; Deng, Yiming; Phiel, Christopher; Yao, Tingting; Zhang, Zhiguo; Wang, Haobin; Ren, Xiaojun 2018 Articles Brain--TumorsEpigeneticsBrain--Cancer--Molecular aspectsCancer
4. Epigenetic Alterations Affecting Transcription Factors and Signaling Pathways in Stromal Cells of Endometriosis Yotova, Iveta; Hsu, Emily; Do, Catherine; Gaba, Aulona; Sczabolcs, Matthias; Dekan, Sabine; Kenner, Lukas; Wenzl, Rene; Tycko, Benjamin 2017 Articles Medical geneticsMethylationEndometriosisGenomics
5. PAXX promotes KU accumulation at DNA breaks and is essential for end-joining in XLF-deficient mice Liu, Xiangyu; Shao, Zhengping; Jiang, Wenxia; Lee, Brian J.; Zha, Shan 2017 Articles GeneticsMice as laboratory animalsDNA damageDNA repair
6. Sensing and Processing of DNA Interstrand Crosslinks by the Mismatch Repair Pathway Kato, Niyo; Kawasoe, Yoshitaka; Williams, Hannah; Coates, Elena Lauren; Roy, Upasana; Shi, Yuqian; Beese, Lorena S.; Scharer, Orlando D.; Yan, Hong; Gottesman, Maxwell E.; Takahashi, Tatsuro S.; Gautier, Jean J. 2017 Articles Crosslinked polymersDNA repairMolecular biologyDNA
7. Epigenetic Inactivation of TRAIL Decoy Receptors at 8p12-21.3 Commonly Deleted Region Confers Sensitivity to Apo2L/TRAIL-Cisplatin Combination Therapy in Cervical Cancer Narayan, Gopeshwar; Xie, Dongxu; Ishdorj, Ganchimeg; Scotto, Luigi; Mansukhani, Mahesh M.; Pothuri, Bhavana; Wright, Jason D.; Kaufmann, Andreas; Schneider, Achim; Arias-Pulido, Hugo; Vundavalli, Murty V. 2016 Articles EpigeneticsGeneticsCervix uteri--CancerCervix uteri--Cancer--TreatmentCarcinogenesis
8. Haploinsufficiency of Bcl11b suppresses the progression of ATM-deficient T cell lymphomas Pinkney, Kerice A.; Jiang, Wenxia; Lee, Brian J.; Loredan, Denis G.; Li, Chen; Bhagat, Govind; Zha, Shan 2015 Articles Transcription factorsLeukemia--Genetic aspectsT cellsImmunologyOncology
9. Trans effects of chromosome aneuploidies on DNA methylation patterns in human Down syndrome and mouse models Mendioroz, Maite; Do, Catherine; Jiang, Xiaoling; Liu, Chunhong; Darbary, Huferesh; Lang, Charles F.; Lin, John; Thomas, Anna; Abu-Amero, Sayeda; Stanier, Philip; Temkin, Alexis; Yale, Alexander; Liu, Meng-Min; Li, Yang; Salas, Martha C.; Kerkel, Kristi; Capone, George; Silverman, Wayne; Yu, Y. Eugene; Moore, Gudrun; Wegiel, Jerzy; Tycko, Benjamin 2015 Articles EpigeneticsChromosomesDown syndromeGeneticsBiomechanics
10. Genetics of follicular lymphoma transformation Pasqualucci, Laura; Khiabanian, Hossein; Fangazio, Marco; Vasishtha, Mansi; Messina, Monica; Holmes, Antony B.; Ouillette, Peter; Trifonov, Vladimir; Rossi, Davide; Tabbò, Fabrizio; Ponzoni, Maurilio; Chadburn, Amy; Vundavalli, Murty V.; Bhagat, Govind; Gaidano, Gianluca; Inghirami, Giorgio; Malek, Sami N.; Rabadan, Raul; Dalla-Favera, Riccardo 2014 Articles GenomicsGeneticsLymphomasCarcinogenesis