1. Behavioral fingerprinting of the naked mole-rat (Heterocephalus glaber) Schwark, Ryan William 2024 Theses BiologyNaked mole ratAnimal behaviorSocial behavior in animalsWhiskersTouch
2. Coordination of histone chaperones for parental histone segregation and epigenetic inheritance Fang, Yimeng 2024 Theses BiologyEpigeneticsHistonesGene expressionNucleotide sequenceDNA replicationHeredity
3. Exploring the effects of dietary fatty acids and iron on modulating sensitivity of lymphomas to ferroptosis Ahmed, Eman Riaz 2024 Theses BiologyLymphomasFatty acidsPhospholipidsPeroxidationImidazolesIron
4. Mammalian translation termination intermediates captured using PDMS microfluidics-based time-resolved cryo-EM (TRCEM) Dadhwal, Prikshat 2024 Theses BiologyBiochemistryBiophysicsEukaryotic cells--GeneticsGenetic translationRibosomesSilicaCryoelectronics
5. Mechanism of activation of the transcriptional activator of the Hedgehog signaling pathway Kim, Hoyon 2024 Theses CytologyDevelopmental biologyHedgehog proteinsDrosophila--DevelopmentPhosphorylationStoichiometryGene targeting
6. Mechanisms for canceling self-generated sounds in a cerebellum-like circuit Zhang, Qianyun 2024 Theses NeurosciencesBiologyMachine learningMice--PhysiologyWhiskersGait in animalsCerebellumMammals--Nervous systemPurkinje cells
7. Regulation of threat responses by dynorphin in the ventromedial prefrontal cortex Limoges, Aaron 2024 Theses BiologyNeurosciencesPsychologyDynorphinsPrefrontal cortexFear--Physiological aspectsConflict (Psychology)--Physiological aspectsOpioids--ReceptorsNeurons
8. Replication stress in activated human NK cells induces sensitivity to apoptosis Guilz, Nicole 2024 Theses BiologyImmunologyKiller cellsApoptosisDiseasesDNA helicases
9. Spatial and Functional Genomic Profiling of Cell States Gu, Ruoyu 2024 Theses BiologyGenomesRNAOxytrichidaeDNA damageDNA repair
10. Spike transmission failures in axons from mouse cortical pyramidal neurons in vivo - raw data Ofer, Netanel; Yuste, Rafael; Cornejo Corona, Victor Hugo 2024 Data (Information) AxonsNeuronsCerebral cortexNeurosciencesBiology
11. The evolution of meiotic recombination in vertebrates: the case of snakes Hoge, Carla R. 2024 Theses BiologyCorn snakeDNA-binding proteinsGeneticsVertebrates
12. The SWI/SNF chromatin remodeling complex promotes SQLE dependency in pancreatic cancer cells Alaghebandan Moinian, Bita 2024 Theses Molecular biologyCancer--Genetic aspectsOncologyPancreas--CancerAdenocarcinomaGene expressionCholesterol--SynthesisSqualene
13. UVSSA regulates transcription-coupled genome maintenance Liebau, Rowyn Church 2024 Theses Molecular biologyDNA damageDNA repairDNA replicationScaffold proteinsGenomesGenetic transcription--RegulationCancer--Genetic aspects
14. A Computational Approach to Rational Engineering of Protein Crystallization Banayan, Nooriel Elan 2023 Theses BiophysicsX-ray crystallographyCrystalloids (Botany)CrystallizationArginineLysine
15. A transcriptomic taxonomy of human microglia: Uncovering roles and regulators in aging and neurologic disease. Tuddenham, John Francis 2023 Theses NeurosciencesMicrogliaNervous system--Diseases--TreatmentCamptothecinAmyotrophic lateral sclerosisNucleotide sequence
16. Cellular arrangement in Pseudomonas aeruginosa biofilms Dayton, Hannah Teckla 2023 Theses BiologyPseudomonas aeruginosaBiofilmsDrug resistance in microorganisms
17. Comparative analysis of nuclear proteomes and strain-specific chromosomes in Oxytricha trifallax Lu, Michael 2023 Theses BiologyCiliata--GeneticsGenomesProteomicsChromosomes
18. Discovery and Optimization of Novel Small-Molecule Inhibitors of Glutathione Peroxidase 4 Lin, Annie 2023 Theses BiologyDrug resistance in cancer cellsCell deathGlutathioneCancer cells--Effect of drugs on
19. Exploring a non-canonical mode of gene regulation mediated by mRNA transcript isoform switching in the context of mammalian development Keskin, Abdurrahman 2023 Theses BiologyEmbryonic stem cellsGene expressionMammals--GeneticsMammals--Development
20. Functional specification of the Caenorhabditis elegans nervous system by homeodomain transcription factors Cros, Cyril Christophe 2023 Theses Developmental biologyNeurosciencesCaenorhabditis elegansNervous systemNeurons
21. Genetic Variant Effects on Transcription Factor Regulation Li, Xiaoting 2023 Theses BiologyHuman genetics--VariationDiseases--Risk factorsHuman genomeGenomicsGenetic transcriptionGene expression
22. Homology-Directed Repair of One- and Two-Ended DNA Double-Strand Breaks Kimble, Michael Taylor 2023 Theses GeneticsDouble-stranded RNADNA repairGenomesDNA damageYeast--GeneticsGenetic recombination
23. Non-canonical WDR33 Isoforms: Characterization, Regulation, and Functional Significances in STING-Mediated Innate Immune Responses Liu, Lizhi 2023 Theses Molecular biologyImmunologyBiochemistryAmino acid sequenceGene expressionMessenger RNAOligomerizationInterferon
24. Population genetic models of mutation rate evolution and adaptation and the impact of essential workers in the context of social distancing for epidemic control Milligan, William Robert 2023 Theses BiologyEvolution (Biology)MutagenesisGerm cellsSocial distancing (Public health)Epidemics--PreventionEpidemiologyAllelomorphismIndustrial hygiene
25. Regulation of EGFR signal transduction and cell division in quiescent Vulval Precursor Cells during dauer developmental arrest O'Keeffe, Catherine 2023 Theses BiologyDevelopmental biologyCaenorhabditis elegansStem cellsVulvaCell division
26. Regulation of redox metabolism in Pseudomonas aeruginosa biofilms Smiley, Marina K. 2023 Theses MicrobiologyBiologyPseudomonas aeruginosaBiofilmsBacteriaDenitrificationPhenazineAnti-infective agents
27. Spatially resolved molecular dysfunction in the prefrontal cortex of patients with amyotrophic lateral sclerosis (ALS) Petrescu, Joana 2023 Theses NeurosciencesAmyotrophic lateral sclerosisNervous system--DiseasesFrontotemporal dementiaPrefrontal cortex
28. SPIDR: The development and application of a highly multiplexed CLIP-seq method Wolin, Erica 2023 Theses Molecular biologyRNA-protein interactionsRNA--Analysis
29. Structural and Functional Studies of CNG channels Hu, Zhengshan 2023 Theses BiologyBiochemistryBiophysicsCyclic nucleotides--AnalysisIon channelsCryoelectronicsElectron microscopy
30. Studies on Eukaryotic Pre-mRNA 3'-End Processing: Insights into PAS Recognition and the U7 snRNP activity Gutierrez Tamayo, Pedro A. 2023 Theses BiologyBiochemical geneticsBiophysicsEukaryotic cells--GeneticsMessenger RNAVertebratesMammals--Molecular genetics
31. The Role of Kinesins in Cell Fate Determination During Neurogenesis Helmer, Paige 2023 Theses BiologyKinesinNeurogeneticsNeuronsBrain--PhysiologyMammals--Nervous systemNeuroglia
32. The Role of the Tail of the Striatum in Associative Learning Stanley, Adrien Trejo 2023 Theses NeurosciencesPaired-association learningMiceBasal gangliaSerotoninNoradrenaline
33. The Role of the Type VI Secretion System in the Adaptation of Pseudomonas aeruginosa to the Lung Fields, Blanche L. 2023 Theses MicrobiologyImmunologyPseudomonas aeruginosa infectionsCystic fibrosis--PatientsLungs--InfectionsProteins--Secretion
34. Understanding the molecular, cellular, and circuit defects characterizing the early stages of Alzheimer’s disease Virga, Daniel Michael 2023 Theses NeurosciencesAlzheimer's disease--PathophysiologyAlzheimer's disease--EtiologyCytologyMolecular biologyNervous system--DiseasesHippocampus (Brain)SynapsesDendritesMitochondrial pathology
35. Widespread 3D genome reorganization precedes programmed DNA rearrangement in Oxytricha trifallax Villano, Danylo Julian 2023 Theses BiologyMolecular biologyGeneticsGenomesCiliataRNAGene rearrangement
36. A genetically-encoded biosensor and a conditional gene expression system for investigating Notch activity in vivo Shaffer, Justin Matthew 2022 Theses Developmental biologyGeneticsGene expressionCell interactionCaenorhabditis elegans--GeneticsExons (Genetics)
37. Analysis of Conformational Continuum and Free-energy Landscapes from Manifold Embedding of Single-particle Cryo-EM Ensembles of Biomolecules Seitz, Evan Elliott 2022 Theses Molecular biologyBiomoleculesElectron microscopy—Data processingMachine learningRiemannian manifoldsGibbs' free energyPath analysis (Statistics)RibosomesCOVID-19 (Disease)--Data processing
38. A non-canonical Hippo signaling pathway regulates DeltaNp63 in cancer cells Low Calle, Ana Maria 2022 Theses Molecular biologySquamous cell carcinomaTranscription factors
39. Auditory Tuning in Vocal Learning Songbirds Yeh, Yow-Tyng 2022 Theses BiologyNeurosciencesSongbirdsBirds--VocalizationBirdsongsSensorimotor cortex
40. Cardiomyopathy at the Intersection of Stem Cells and Tissue Engineering Wang, Bryan Zicheng 2022 Theses BiologyMyocardium--DiseasesStem cellsGene editingTissue engineeringHeart--Diseases--Genetic aspects
41. Detection of respiratory gas levels by internal sensory neurons in Drosophila larvae Lu, Shan 2022 Theses NeurosciencesDrosophila--DevelopmentSensory neuronsHypoxia (Water)Carbon dioxideRespiratory gas monitoringInsects--Larvae
42. Development of genetically intact bioengineered spores of Bacillus subtilis Flores Quijano, Juan Manuel de Jesus 2022 Theses BiologyBacillus subtilis--GeneticsPlasmids--GeneticsBiotechnologyNatural pesticidesProbiotics
43. Expression and Functional Analyses of the Entire Cadherin Gene Family in C. elegans Majeed, Maryam 2022 Theses BiologyNeurosciencesCaenorhabditis elegans--GeneticsGene expressionCadherins
44. Identification of essential sites of lipid peroxidation in ferroptosis Von Krusenstiern, Alfred Nikolai; Stockwell, Brent R. 2022 Data (Information) Lipids--PeroxidationLipids--MetabolismCell deathMedicine
45. Identification of essential sites of lipid peroxidation in ferroptosis (Lipidomics Data) Von Krusenstiern, Alfred Nikolai; Stockwell, Brent R. 2022 Data (Information) Lipids--PeroxidationLipids--MetabolismCell deathMedicine
46. Klebsiella pneumoniae induces host metabolic stress that promotes tolerance to pulmonary infection Wong Fok Lung, Tania; Charytonowicz, Daniel; Beaumont, Kristin G.; Shah, Shivang; Sridhar, Shwetha H.; Gorrie, Claire L.; Mu, Andre; Hofstaedter, Casey E.; Varisco, David; McConville, Thomas Howe; Drikic, Marija; Fowler, Brandon; Urso, Andreacarola; Shi, Wei; Fucich, Dario; Annavajhala, Medini; Khan, Ibrahim N.; Oussenko, Irina; Francoeur, Nancy; Smith, Melissa L.; Stockwell, Brent R.; Lewis, Ian A.; Hachani, Abderrahman; Upadhyay Baskota, Swikrity; Uhlemann, Anne-Catrin; Ahn, Danielle; Ernst, Robert K.; Howden, Benjamin P.; Sebra, Robert; Prince, Alice S. 2022 Articles ImmunosuppressionKlebsiella pneumoniaeLungs--InfectionsNosocomial infectionsMedicine
47. Machine learning classifies ferroptosis and apoptosis cell death modalities with TfR1 immunostaining Jin, Jenny; Schorpp, Kenji; Samaga, Daniel; Unger, Kristian; Hadian, Kamyar; Stockwell, Brent R. 2022 Data (Information) Cell deathMachine learningClassification
48. Multidimensional encoding of context in auditory cortex Shymkiv, Yuriy 2022 Theses NeurosciencesAuditory cortexCalcium imagingSensory stimulation
49. Nucleolar transcription and its connections to nucleolar homeostasis and mitochondrial stress responses Feng, Shuang 2022 Theses Molecular biologyNucleic acidsHomeostasisMitochondriaCarcinogenesisNervous system--Diseases
50. Production and properties of the Pseudomonas aeruginosa R-body virulence factor Wang, Bryan 2022 Theses MicrobiologyPseudomonas aeruginosaAntibiotics--Therapeutic useBiofilms