1. Behavioral fingerprinting of the naked mole-rat (Heterocephalus glaber) Schwark, Ryan William 2024 Theses BiologyNaked mole ratAnimal behaviorSocial behavior in animalsWhiskersTouch
2. Coordination of histone chaperones for parental histone segregation and epigenetic inheritance Fang, Yimeng 2024 Theses BiologyEpigeneticsHistonesGene expressionNucleotide sequenceDNA replicationHeredity
3. Exploring the effects of dietary fatty acids and iron on modulating sensitivity of lymphomas to ferroptosis Ahmed, Eman Riaz 2024 Theses BiologyLymphomasFatty acidsPhospholipidsPeroxidationImidazolesIron
4. Mammalian translation termination intermediates captured using PDMS microfluidics-based time-resolved cryo-EM (TRCEM) Dadhwal, Prikshat 2024 Theses BiologyBiochemistryBiophysicsEukaryotic cells--GeneticsGenetic translationRibosomesSilicaCryoelectronics
5. Mechanisms for canceling self-generated sounds in a cerebellum-like circuit Zhang, Qianyun 2024 Theses NeurosciencesBiologyMachine learningMice--PhysiologyWhiskersGait in animalsCerebellumMammals--Nervous systemPurkinje cells
6. Patient Derived Organoids as a Platform for Assessing Therapy Response and Characterizing Epithelial Plasticity in Bladder Cancer Syed, Talal Ahsan 2024 Theses BiologyBioinformaticsCytologyBladder--Cancer--TreatmentEpitheliumCystoscopesFluorescence spectroscopyBladder--Cancer--DiagnosisUnited States. Food and Drug Administration
7. Regulation of threat responses by dynorphin in the ventromedial prefrontal cortex Limoges, Aaron 2024 Theses BiologyNeurosciencesPsychologyDynorphinsPrefrontal cortexFear--Physiological aspectsConflict (Psychology)--Physiological aspectsOpioids--ReceptorsNeurons
8. Replication stress in activated human NK cells induces sensitivity to apoptosis Guilz, Nicole 2024 Theses BiologyImmunologyKiller cellsApoptosisDiseasesDNA helicases
9. Spatial and Functional Genomic Profiling of Cell States Gu, Ruoyu 2024 Theses BiologyGenomesRNAOxytrichidaeDNA damageDNA repair
10. Spike transmission failures in axons from mouse cortical pyramidal neurons in vivo - raw data Ofer, Netanel; Yuste, Rafael; Cornejo Corona, Victor Hugo 2024 Data (Information) AxonsNeuronsCerebral cortexNeurosciencesBiology
11. The evolution of meiotic recombination in vertebrates: the case of snakes Hoge, Carla R. 2024 Theses BiologyCorn snakeDNA-binding proteinsGeneticsVertebrates
12. Cellular arrangement in Pseudomonas aeruginosa biofilms Dayton, Hannah Teckla 2023 Theses BiologyPseudomonas aeruginosaBiofilmsDrug resistance in microorganisms
13. Comparative analysis of nuclear proteomes and strain-specific chromosomes in Oxytricha trifallax Lu, Michael 2023 Theses BiologyCiliata--GeneticsGenomesProteomicsChromosomes
14. Discovery and Optimization of Novel Small-Molecule Inhibitors of Glutathione Peroxidase 4 Lin, Annie 2023 Theses BiologyDrug resistance in cancer cellsCell deathGlutathioneCancer cells--Effect of drugs on
15. Exploring a non-canonical mode of gene regulation mediated by mRNA transcript isoform switching in the context of mammalian development Keskin, Abdurrahman 2023 Theses BiologyEmbryonic stem cellsGene expressionMammals--GeneticsMammals--Development
16. Genetic Variant Effects on Transcription Factor Regulation Li, Xiaoting 2023 Theses BiologyHuman genetics--VariationDiseases--Risk factorsHuman genomeGenomicsGenetic transcriptionGene expression
17. Population genetic models of mutation rate evolution and adaptation and the impact of essential workers in the context of social distancing for epidemic control Milligan, William Robert 2023 Theses BiologyEvolution (Biology)MutagenesisGerm cellsSocial distancing (Public health)Epidemics--PreventionEpidemiologyAllelomorphismIndustrial hygiene
18. Regulation of EGFR signal transduction and cell division in quiescent Vulval Precursor Cells during dauer developmental arrest O'Keeffe, Catherine 2023 Theses BiologyDevelopmental biologyCaenorhabditis elegansStem cellsVulvaCell division
19. Regulation of redox metabolism in Pseudomonas aeruginosa biofilms Smiley, Marina K. 2023 Theses MicrobiologyBiologyPseudomonas aeruginosaBiofilmsBacteriaDenitrificationPhenazineAnti-infective agents
20. Structural and Functional Studies of CNG channels Hu, Zhengshan 2023 Theses BiologyBiochemistryBiophysicsCyclic nucleotides--AnalysisIon channelsCryoelectronicsElectron microscopy
21. Studies on Eukaryotic Pre-mRNA 3'-End Processing: Insights into PAS Recognition and the U7 snRNP activity Gutierrez Tamayo, Pedro A. 2023 Theses BiologyBiochemical geneticsBiophysicsEukaryotic cells--GeneticsMessenger RNAVertebratesMammals--Molecular genetics
22. The Role of Kinesins in Cell Fate Determination During Neurogenesis Helmer, Paige 2023 Theses BiologyKinesinNeurogeneticsNeuronsBrain--PhysiologyMammals--Nervous systemNeuroglia
23. Widespread 3D genome reorganization precedes programmed DNA rearrangement in Oxytricha trifallax Villano, Danylo Julian 2023 Theses BiologyMolecular biologyGeneticsGenomesCiliataRNAGene rearrangement
24. Auditory Tuning in Vocal Learning Songbirds Yeh, Yow-Tyng 2022 Theses BiologyNeurosciencesSongbirdsBirds--VocalizationBirdsongsSensorimotor cortex
25. Cardiomyopathy at the Intersection of Stem Cells and Tissue Engineering Wang, Bryan Zicheng 2022 Theses BiologyMyocardium--DiseasesStem cellsGene editingTissue engineeringHeart--Diseases--Genetic aspects
26. Development of genetically intact bioengineered spores of Bacillus subtilis Flores Quijano, Juan Manuel de Jesus 2022 Theses BiologyBacillus subtilis--GeneticsPlasmids--GeneticsBiotechnologyNatural pesticidesProbiotics
27. Expression and Functional Analyses of the Entire Cadherin Gene Family in C. elegans Majeed, Maryam 2022 Theses BiologyNeurosciencesCaenorhabditis elegans--GeneticsGene expressionCadherins
28. Understanding and Engineering Multicomponent Living Systems: Examples from Synthetic Genomics and Engineered Living Materials McBee, Andrew Ross MacKay 2022 Theses BiologySynthetic biologyGenomicsMetazoaAmino acidsValineMycelium
29. A Comparative Analysis of Genome Rearrangement in Ciliates Feng, Yi 2021 Theses BiologyBioinformaticsEvolution (Biology)Gene rearrangementCiliata--GeneticsEuplotesGenetic code
30. Broad-scale variation in human genetic diversity levels is predicted by purifying selection on coding and non-coding elements Murphy, David 2021 Theses GeneticsEvolution (Biology)BiologyHuman genomeBiodiversity
31. Disentangling mutation and selection in human genetic variation: promises and pitfalls Agarwal, Ipsita 2021 Theses BiologyGeneticsEvolution (Biology)Mutation (Biology)Human genomeExomes
32. Electromechanical Coupling in Cells and Its Effects on Membrane Tension and Conductance Jones Molina, John Anthony 2021 Theses BiophysicsCytologyBiologyCell membranes
33. Framework for Mapping Gene Regulation via Single-cell Genetic Screens Tan, Xiangtian 2021 Theses BiologyCytologyGenetic transcription--RegulationCancer cellsProteins--Analysis
34. Function and Regulation of ALS/FTD-associated RNA Binding Protein FUS Tsai, Yueh-Lin 2021 Theses BiologyCytologyMolecular biologyRNA-protein interactionsAmyotrophic lateral sclerosisDementia
35. Mutagenic Repair Outcomes of DNA Double-Strand Breaks Al-Zain, Amr M. 2021 Theses BiologyMolecular biologyDouble-stranded RNACancer--EtiologyCancer--Genetic aspectsGenomesMutagenesis
36. Novel Functions for Dynein Adaptor RILP in Neuronal Autophagy Khobrekar, Noopur V. 2021 Theses BiologyNeurobiologyBiochemistryDyneinAutophagic vacuolesCell organelles
37. Regulation of heterochromatin formation by the JmjC-domain protein Epe1 Bao, Kehan 2021 Theses BiologyEukaryotic cells--GeneticsHeterochromatinChromatinDNA
38. Role of Mu-Opioid Receptors in the Behavioral Effects of the Antidepressant Tianeptine Han, Jaena 2021 Theses BiologyNeurosciencesDepression, Mental--TreatmentAntidepressantsSerotonin uptake inhibitorsMice
39. Structural Studies of NediV-IRES-Mediated Translation Initiation Altomare, Clara Gilda 2021 Theses BiologyVirusesRNA virusesRibosomesEukaryotic cellsGenetic translation
40. Ultrastructural analysis of dendritic spine necks reveals a continuum of spine morphologies: Models Ofer, Netanel; Yuste, Rafael 2021 Data (Information) NeuronsUltrastructure (Biology)BiologyNeurosciences
41. Adipocytes Secrete Lipid-Laden Exosomes and Influence Local Macrophage Behavior Flaherty, Stephen 2020 Theses BiologyLipaseMacrophagesFat cellsAdipose tissues--Analysis
42. Elucidating the abilities of MDM2, MDMX and p21 to regulate ferroptosis Venkatesh, Divya 2020 Theses BiologyGeneticsLipids--PeroxidationCell deathCancer
43. Hierarchical Modularity in the Reassembly of Hydra’s Nervous System Lovas, Jonathan Roek 2020 Theses NeurosciencesDevelopmental biologyBiologyHydraNeural circuitry
44. Landscape of the p53 transcriptome and clinical implications Regunath, Kausik 2020 Theses BiologyGenomesCancer--Genetic aspectsTumors
45. Light and Temperature Cues Elicit Metabolic Reprogramming in the Non-phototrophic Bacterium Pseudomonas aeruginosa Kahl, Lisa Juliane 2020 Theses BiologyMicrobiologyMetabolismBiological rhythmsPhotobiologyBacteria--PhysiologyRespiration
46. Predicting Autonomous Promoter Activity Based on Genome-wide Modeling of Massively Parallel Reporter Data FitzPatrick, Vincent Drury 2020 Theses BiologyStatisticsPromoters (Genetics)Genomics--Statistical methodsGenetic polymorphisms
47. Screening Whole-Genome Sequenced Strains to Investigate Genetic Determinants of Gentle Touch Sensitivity in Caenorhabditis elegans Lawry, Stephanie Terese 2020 Theses GeneticsBiologyGenomicsGenomesNematodesTouchNeurosciences
48. Sexually Dimorphic Development of the Caenorhabditis elegans Nervous System Bayer, Emily Ann 2020 Theses BiologyCaenorhabditis elegansSexual dimorphism (Animals)Genetic sex determinationTranscription factorsNervous system
49. Single-particle cryo-electron microscopy studies of ribosomes with fragmented 28S rRNA Gutierrez-Vargas, Cristina 2020 Theses BiologyStructural bioinformaticsRibosomes--StructureRNATrypanosoma cruziFragmentation reactions
50. The Neural Basis of Sugar and Fat Cravings Tan, Hwei-Ee 2020 Theses NeurosciencesBiologySugarGlucoseFatAppetite
51. Applying medicinal chemistry principles to the Olfactory Code Tahirova, Narmin Tahir 2019 Theses BiologyNeurosciencesChemistryOlfactory receptorsPharmaceutical chemistry
52. Computational and Imaging Methods for Studying Neuronal Populations during Behavior Han, Shuting 2019 Theses BiologyNeurosciencesMachine learningBrain--ImagingNeuropsychiatryAnimal behaviorNeurons
53. Life history effects on neutral polymorphism and divergence rates, in autosomes and sex chromosomes Amster, Guy 2019 Theses BiologySex chromosomesGenetic polymorphismsPopulation geneticsChromosomesBiodiversity
54. Mapping the whole-body muscle activity of Hydra vulgaris Szymanski, John Robert; Yuste, Rafael 2019 Data (Information) BiologyHydraMusclesEvolution (Biology)
55. Novel functions of C9ORF72, a gene involved in ALS/FTD Fomin, Vitalay 2019 Theses BiologyBiochemistryGeneticsCytologyAmyotrophic lateral sclerosisFrontotemporal dementiaGene expression
56. Population Genetics of Mutation Load and Quantitative Traits in Humans Simons, Yuval Benjamin 2019 Theses GeneticsBiologyHuman population geneticsMutation (Biology)
57. Quantifying spatiotemporal dynamics of human gut microbiota and metabolic limitations of cancer cell growth Ji, Brian 2019 Theses BiologyBiological systemsCancer cells--Growth--RegulationGastrointestinal system--MicrobiologyCell metabolism
58. Quantitative trait variation and adaptation in contemporary humans Mostafavi, Hakhamanesh 2019 Theses BiologyGeneticsHuman evolutionGenomes--Data processingHuman genetics--VariationMortality
59. Structural studies of the yeast transcription termination complex Nrd1-Nab3-Sen1 Zhang, Yinglu 2019 Theses BiologyMolecular biologyBiochemistryRNA polymerasesGenetic transcription
60. Studies on RNA Regulation: From Enhancer RNAs to RBBP6 Isoform3 Chen, Yaqiong 2019 Theses Molecular biologyRNAGenetic regulationBiology
61. Allosteric Coupling, Nucleotide Binding and ATP Hydrolysis by Hsp70 Chaperones on a Structural Basis Wang, Wei 2018 Theses BiologyBiochemistryBiophysicsAllosteric regulationHeat shock proteins
62. An atlas of Caenorhabditis elegans chemoreceptor expression Iglesias, Berta Vidal; Aghayeva, Ulkar; Sun, Haosheng; Wang, Chen; Glenwinkel, Lori Ann; Bayer, Emily Ann; Hobert, Oliver 2018 Articles Caenorhabditis elegansChemoreceptorsNeurosciencesBiology
63. A population genetic interpretation of GWAS findings for human quantitative traits Simons, Yuval Benjamin; Bullaughey, Kevin; Hudson, Richard R.; Sella, Guy 2018 Articles GeneticsPhenotypeBiologyHuman genome
64. cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg Newcomb, Susan Elizabeth; Voutev, Roumen; Jory, Aurelie E.; Delker, Rebecca; Slattery, Matthew; Mann, Richard S. 2018 Articles Drosophila melanogaster--GeneticsGrowth factors--ReceptorsCloningBiologyGene expression
65. Comprehensive machine learning analysis of Hydra behavior reveals a stable basal behavioral repertoire Han, Shuting; Taralova, Ekaterina; Dupre, Christophe; Yuste, Rafael 2018 Articles NeurosciencesMachine learningAnimal behaviorBehavioral assessmentBiology
66. Context-dependent expression of a conditionally-inducible form of active Akt Park, Soyeon; Burke, Robert E.; Kareva, Tatyana; Kholodilov, Nikolai; Aime, Pascaline; Franke, Thomas F.; Levy, Oren Abraham; Greene, Lloyd A. 2018 Articles Protein kinasesDopaminergic neuronsNeurosciencesBiology
67. Functional odor classification through a medicinal chemistry approach Poivet, Erwan E.; Tahirova, Narmin Tahir; Peterlin, Zita; Xu, Lu; Zou, Dong-Jing; Acree, Terry; Firestein, Stuart J. 2018 Articles BiochemistryPharmaceutical chemistryOdorsBiology
68. Hydra Behavior Dataset Han, Shuting 2018 Data (Information) HydraAnimal behaviorAnimals--FoodBiology
69. Investigating The Role Of Signaling Pathways In Adult Stem Cells Governed By Population Asymmetry Melamed, David Eric 2018 Theses BiologyCellular signal transductionAdult stem cells
70. Light sheet theta microscopy for rapid high-resolution imaging of large biological samples Migliori, Bianca; Datta, Malika S.; Dupre, Christophe; Apak, Mehmet C.; Asano, Shoh; Gao, Ruixuan; Boyden, Edward S.; Hermanson, Ola; Yuste, Rafael; Tomer, Raju 2018 Articles BiologyMicroscopyBrain--ImagingHigh resolution imagingNeurosciences
71. Markers and Mechanisms of β-cell Dedifferentiation Fan, Jason Chen 2018 Theses MedicineBiologyCytologyPancreatic beta cells
72. Metabolic Strategies to Cope with Overcrowding in a Pseudomonas aeruginosa Biofilm Jo, Jeanyoung 2018 Theses BiologyMicrobiologyPseudomonas aeruginosaBiofilmsMicrobial respiration
73. Multi-level analysis of regulation of EGFR signalling during Drosophila melanogaster leg proximal-distal axis patterning Newcomb, Susan Elizabeth 2018 Theses BiologyGeneticsGrowth factors--ReceptorsEpidermal growth factorDrosophila melanogaster
74. On the Role of Sensory Cancellation and Corollary Discharge in Neural Coding and Behavior Enikolopov, Armen 2018 Theses NeurosciencesBiologySensory stimulationCochlear nucleus
75. Simultaneous two-photon imaging and two-photon optogenetics of cortical circuits in three dimensions Yang, Weijian; Carrillo-Reid, Luis; Bando, Yuki; Peterka, Darcy; Yuste, Rafael 2018 Articles BiologyOptogeneticsNeural circuitryImaging systems in biology
76. Spatially restricted regulation of cell competition by the cytokine Spaetzle Alpar, Elif Lale 2018 Theses BiologyGeneticsCytokinesCells--Growth--Regulation
77. Structural Studies of the Integrator Complex -- pre-UsnRNA 3'-end Processing Machinery Wu, Yixuan 2018 Theses BiologyBiochemistryCatalytic RNA
78. The Molecular Mechanism of Replication Independent Repair of DNA Interstrand Crosslinks Kato, Niyo 2018 Theses BiologyGeneticsDNA repairCrosslinking (Polymerization)Molecular biology
79. The Mre11-Rad50-Xrs2 Complex in the DNA Damage Response Oh, Julyun 2018 Theses BiologyGeneticsMolecular biologyDNA damageDNA repair
80. The Physical State of Water in Dormant Bacteria DeLay, Michael 2018 Theses BiophysicsBacteriaBacterial sporesWaterBiology
81. Understand Biology Using Single Cell RNA-Sequencing Ding, Hongxu 2018 Theses BiologyNucleotide sequenceSystems biology
82. An orphan cbb3-type cytochrome oxidase subunit supports Pseudomonas aeruginosa biofilm growth and virulence Jo, Jeanyoung; Cortez, Krista Lynn; Cornell, William-Cole; Price-Whelan, Alexa M.; Dietrich, Lars 2017 Articles BiofilmsPathogenic bacteriaPseudomonas aeruginosaCytochrome oxidaseBiology
83. Attenuation of Synaptic Potentials in Dendritic Spines Kwon, Taekyung; Sakamoto, Masayuki; Peterka, Darcy; Yuste, Rafael 2017 Articles DendritesBiophysicsNeuronsBiology
84. Bacterial tail anchors can target to the mitochondrial outer membrane Lutfullahoğlu-Bal, Güleycan; Keskin, Abdurrahman; Seferoğlu, Ayşe B.; Dunn, Cory D. 2017 Articles BiologyBacterial proteinsEndosymbiosisMitochondrial membranesEukaryotic cellsCell organelles--Formation
85. Cryo-electron microscopy and single particle reconstructions of the Leishmania major ribosome and of the encephalomyocarditis virus internal ribosome entry site bound to the 40S subunit Jobe, Amy Beth 2017 Theses Electron microscopyRibosomesLeishmaniaRNACryoelectronicsBiologyBiochemistryBiophysics
86. Overproduction of Neurons Is Correlated with Enhanced Cortical Ensembles and Increased Perceptual Discrimination Fang, Weiqun; Yuste, Rafael 2017 Articles NeuronsVisual perceptionVisual cortexDevelopmental neurobiologyBiology
87. Regulation of Proviral Expression and Post-Translational Modifications in Embryonic Cells Lee, Andreia H. 2017 Theses BiologyVirologyCytologyGenetic regulation
88. Reliable and Elastic Propagation of Cortical Seizures In Vivo Wenzel, Michael; Hamm, Jordan P.; Peterka, Darcy; Yuste, Rafael 2017 Articles SpasmsEpilepsyNeural circuitryBiologyPicrotoxin
89. Structural and Functional Studies of TRPML1 and TRPP2 Benvin, Nicole Marie 2017 Theses BiologyBiochemistryBiophysicsTRP channelsProteins--Structure
90. Study of Short Forms of P/Q-Type Voltage-Gated Calcium Channels Feng, Qiao 2017 Theses Central nervous systemNeurotransmittersBrain--DiseasesCalcium channelsBiology
91. The Development of an Inducible Akt as a Potential Gene Therapy for Parkinson’s Disease Park, Soyeon 2017 Theses BiologyNeurosciencesParkinson's diseaseGene therapyProtein kinases
92. The N-terminal domains of FLASH and Lsm11 form a 2:1 heterotrimer for histone pre-mRNA 3’-end processing Aik, Wei Shen; Lin, Min-Han; Tan, Dazhi; Tripathy, Ashutosh; Marzluff, William F.; Dominski, Zbigniew; Chou, Chi-Yuan; Tong, Liang 2017 Articles Crosslinking (Polymerization)DimersCrystals--StructureBiology
93. The population genetics of human disease: The case of recessive, lethal mutations Amorim, Carlos Eduardo G.; Gao, Ziyue; Baker, Zachary; Diesel, Jose Francisco; Simons, Yuval Benjamin; Haque, Imran S.; Pickrell, Joseph K.; Przeworski, Molly F. 2017 Articles Population geneticsBiologyMutation (Biology)Medical genetics
94. The roles of Threonine-4 and Tyrosine-1 of the RNA Polymerase II C-Terminal Domain: New insights into transcription from Saccharomyces cerevisiae Yurko, Nathan Michael 2017 Theses BiologyRNA polymerasesGenetic transcriptionSaccharomyces cerevisiae
95. Unraveling the link between the Mdm2-p53 axis and aging Wu, Danyi 2017 Theses BiologyMolecular biologyAgingp53 protein
96. Using Genomic Transgenes and the CRISPR/Cas9 Gene Editing System to Understand How Hedgehog Signaling Regulates Costal2 and Cubitus Interruptus in Drosophila melanogaster Little, Jamie 2017 Theses BiologyHedgehog proteinsMolecular biologyGenes
97. Watching the Replisome: Single-molecule Studies of Eukaryotic DNA Replication Duzdevich, Daniel 2017 Theses DNA replicationMolecular biologyCytologyEukaryotic cells--GeneticsBiologyBiophysics
98. A Genomic Map of the Effects of Linked Selection in Drosophila Elyashiv, Eyal; Sattath, Shmuel; Hu, Tina T.; Strutsovsky, Alon; McVicker, Graham; Andolfatto, Peter; Coop, Graham; Sella, Guy 2016 Articles Evolutionary geneticsBiodiversityNatural selection--Mathematical modelsGeneticsBiology
99. Connecting Cellular Redox State and Community Behavior in Pseudomonas aeruginosa PA14 Okegbe, Chinweike 2016 Theses MorphologyOxidation-reduction reactionBiofilmsBiology
100. Cryo-electron microscopy studies of dynamical features of ribosomes during the translation process Sun, Ming 2016 Theses BiophysicsProteins--StructureRibosomes--StructureRibosomesCryoelectronicsBiologyBiochemistry