Academic Unit: Biochemistry and Molecular Biophysics / Language: English | Search Results

1. Discovery of RNA-guided DNA integration by CRISPR-associated transposases

: Klompe, Sanne Eveline
: 2023
: Theses
: Molecular biologyDNA-protein interactionsRNA-protein interactionsBacterial genomesImmunologyProkaryotesEscherichia coli

2. Structure and Neutralization of Viral Fusion Proteins

: Casner, Ryan Gavin
: 2023
: Theses
: BiochemistryCOVID-19 (Disease)ImmunoglobulinsCryoelectronicsVaccines--Design

3. Atf5 Links Olfactory Receptor Induced Stress Response to Proper Neuronal Function

: Kahiapo, Jerome Keoki
: 2020
: Theses
: CytologyBiochemistryMolecular biologyOlfactory receptor genesSmellSensory neuronsMammals

4. Structural and Biophysical Studies of Hair Cell Mechanotransduction Proteins

: Dionne, Gilman
: 2020
: Theses
: BiochemistryBiophysicsProteinsCellular signal transduction--Research

5. Biomolecular NMR spectroscopy: Application to the study of the piRNA-pathway protein GTSF1, and backbone and side-chain spin relaxation methods development

: O'Brien, Paul
: 2019
: Theses
: BiophysicsBiochemistryNuclear magnetic resonance spectroscopyProteins--StructureMolecular dynamics

6. Elucidating synergistic dependencies in lung adenocarcinoma by proteome-wide signaling-network analysis

: Bansal, Mukesh; He, Jing; Peyton, Michael; Kustagi, Manjunath; Iyer, Archana; Comb, Michael; White, Michael; Minna, John D.; Califano, Andrea
: 2019
: Articles
: AdenocarcinomaMolecular biologyLungs--Cancer--Molecular aspectsProteomics

7. Solving Challenging Structures using Single-Particle Cryogenic Electron Microscopy

: Tan, Yong Zi
: 2019
: Theses
: BiochemistryBiophysicsElectron microscopyMacromolecules--StructureRibosomesMembrane proteinsCytology--Technique

8. Accurate and sensitive quantification of protein-DNA binding affinity

: Rastogi, Chaitanya; Rube, Hans Tomas; Kribelbauer, Judith Franziska; Crocker, Justin; Loker, Ryan Edmund; Martini, Gabriella D.; Laptenko, Oleg; Freed-Pastor, William Allen; Prives, Carol L.; Stern, David L.; Mann, Richard S.; Bussemaker, Harmen J.
: 2018
: Articles
: Transcription factorsDNA-protein interactionsProtein bindingProbabilities--Mathematical models

9. Balance Control Mediated by Vestibular Circuits Directing Limb Extension or Antagonist Muscle Co-activation

: Murray, Andrew; Croce, Katherine; Belton, Timothy; Akay, Turgay; Jessell, Thomas M.
: 2018
: Articles
: Motor ability--Physiological aspectsMotor ability--TestingNeurochemistryMolecular biologyVestibular nucleiEquilibrium (Physiology)Neurosciences

10. Cell type-specific CLIP reveals that NOVA regulates cytoskeleton interactions in motoneurons

: Yuan, Yuan; Xie, Shirley; Darnell, Jennifer C.; Darnell, Andrew J.; Saito, Yuhki; Phatnani, Hemali P.; Murphy, Elisabeth A.; Zhang, Chaolin; Maniatis, Tom; Darnell, Robert B.
: 2018
: Articles
: Motor neuronsCytoskeletonSeptinsRNA splicingBiology

11. cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg

: Newcomb, Susan Elizabeth; Voutev, Roumen; Jory, Aurelie E.; Delker, Rebecca; Slattery, Matthew; Mann, Richard S.
: 2018
: Articles
: Drosophila melanogaster--GeneticsGrowth factors--ReceptorsCloningBiologyGene expression

12. Developing a molecular dynamics force field for both folded and disordered protein states

: Robustelli, Paul; Piana, Stefano; Shaw, David Elliot
: 2018
: Articles
: Molecular dynamicsComputer simulationProteinsProtein folding

13. Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES

: Pisareva, Vera P.; Pisarev, Andrey V.; Fernández, Israel S.
: 2018
: Articles
: VirologyRNAHepatitis C virusBiochemistry

14. Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme

: Zhang, Zhening; Liang, Wenguang G.; Bailey, Lucas J.; Tan, Yong Zi; Wei, Hui; Wang, Andrew; Farcasanu, Mara; Woods, Virgil A.; McCord, Lauren A.; Lee, David; Shang, Weifeng; Deprez-Poulain, Rebecca; Deprez, Benoit; Liu, David R.; Koide, Akiko; Koide, Shohei; Kossiakoff, Anthony A.; Li, Sheng; Carragher, Bridget; Potter, Clinton; Tang, Wei-Jen
: 2018
: Articles
: Molecular biologyInsulinPeptidesProteolytic enzymesBiophysics

15. Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma

: Pan, Yuan; Duron, Christina; Bush, Erin C.; Ma, Yu; Sims, Peter A.; Gutmann, David H.; Radunskaya, Ami; Hardin, Johanna
: 2018
: Articles
: GliomasGene regulatory networksGene expressionSystem analysisSystems biologyMathematics

16. Integration of EGFR and LIN-12/Notch signaling in Vulval Precursor Cell fate specification in Caenorhabditis elegans

: Underwood, Ryan
: 2018
: Theses
: BiochemistryMetazoaCell interactionCellular signal transductionBiophysics

17. Mechanics of Gram-positive bacterial cell adhesion

: Echelman, Daniel Jay
: 2018
: Theses
: BiophysicsNanoscienceMicrobiologyCell adhesion--Molecular aspectsGram-positive bacteriaCells--Mechanical properties

18. Mechanism of calmodulin inactivation of the calcium-selective TRP channel TRPV6

: Singh, Appu K.; McGoldrick, Luke Lawrence Reedy; Twomey, Edward Charles; Sobolevsky, Alexander I.; Columbia University. Cellular, Molecular and Biomedical Studies
: 2018
: Articles
: CalmodulinTRP channelsMolecular biologyIon channels

19. Precise temporal regulation of alternative splicing during neural development

: Weyn-Vanhentenryck, Sabastien Matthieu; Feng, Huijuan; Ustianenko, Dmytro; Duffié, Rachel; Yan, Qinghong; Jacko, Martin; Martinez, Jose C.; Goodwin, Marianne; Zhang, Xuegong; Hengst, Ulrich; Lomvardas, Stavros; Swanson, Maurice S.; Zhang, Chaolin
: 2018
: Articles
: Genetic regulationNeurologyRNA splicing

20. RNA force field with accuracy comparable to state-of-the-art protein force fields

: Tan, Dazhi; Piana, Stefano; Dirks, Robert M.; Shaw, David Elliot
: 2018
: Articles
: BiochemistryBiophysicsRNA-protein interactionsMolecular dynamicsNucleic acids

21. Routine single particle CryoEM sample and grid characterization by tomography

: Noble, Alex J.; Dandey, Venkata P.; Wei, Hui; Brasch, Julia; Chase, Jillian; Acharya, Priyamvada; Tan, Yong Zi; Zhang, Zhening; Kim, Laura Y.; Scapin, Giovanna; Rapp, Micah Allen; Eng, Edward T.; Rice, William J.; Cheng, Anchi; Negro, Carl J.; Shapiro, Lawrence S.; Kwong, Peter D.; Jeruzalmi, David; des Georges, Amedee; Potter, Clinton; Carragher, Bridget
: 2018
: Articles
: TomographyBiochemistryParticlesBiophysicsElectron microscopy

22. SCOPE-Seq: a scalable technology for linking live cell imaging and single-cell RNA sequencing

: Yuan, Jinzhou; Sheng, Jenny; Sims, Peter A.
: 2018
: Articles
: Imaging systems in biologyNucleotide sequenceMicrofluidicsMolecular biology

23. Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry

: Freddolino, Peter L.; Yang, Jamie Siyu; Momen-Roknabadi, Amir; Tavazoie, Saeed
: 2018
: Articles
: Gene regulatory networksSystems biologyGene expressionStochastic processesEpigenetics

24. Structural and biophysical studies of the Drosophila melanogaster Dpr and DIP families

: Cosmanescu, Filip
: 2018
: Theses
: BiochemistryNeurosciencesBiophysicsDrosophila melanogasterNeurons

25. Structure-based analysis of CysZ-mediated cellular uptake of sulfate

: Assur, Zahra; Liu, Qun; Clarke, Oliver B.; Belcher Dufrisne, Meagan Leigh; Wiriyasermkul, Pattama; Giesem, M. Hunter; Leal-Pinto, Edgar; Kloss, Brian; Tabuso, Shantelle; Love, James; Punta, Marco; Banerjee, Surajit; Rajashankar, Kanagalaghatta R.; Rost, Burkhard; Logothetis, Diomedes; Quick, Matthias; Hendrickson, Wayne A.; Mancia, Filippo
: 2018
: Articles
: CytologySulfatesExtracellular matrixCell physiologyBiophysics

26. Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding

: Rao, Satyanarayan; Chiu, Tsu-Pei; Kribelbauer, Judith F.; Mann, Richard S.; Bussemaker, Harmen J.; Rohs, Remo
: 2018
: Articles
: DNA--MethylationEpigeneticsDNA-binding proteinsSystems biology

27. Systematic reconstruction of autism biology from massive genetic mutation profiles

: Luo, Weijun; Zhang, Chaolin; Jiang, Yong-hui; Brouwer, Cory R.
: 2018
: Articles
: Mutation (Biology)Developmental geneticsAutism--ResearchAutism spectrum disorders--Genetic aspectsSystems biology

28. Cooperative interactions enable singular olfactory receptor expression in mouse olfactory neurons

: Monahan, Kevin; Schieren, Ira; Cheung, Jonah; Mumbey-Wafula, Alice Mary; Monuki, Edwin S.; Lomvardas, Stavros
: 2017
: Articles
: GeneticsOlfactory receptor genesGene expressionOlfactory nerve

29. Nanoscale Electrical and Coarse-grained Molecular Dynamics Studies of Influenza Hemagglutinin-mediated Membrane Fusion Pores

: Alcott, Brett Eugene
: 2017
: Theses
: BiophysicsBiochemistryVirologyMolecular dynamicsMembrane fusion

30. Potent and reversible lentiviral vector restriction in murine induced pluripotent stem cells

: Geis, Franziska K.; Galla, Melanie; Hofmann, Dirk; Kuehle, Johannes; Zychlinski, Daniela; Maetzig, Tobias; Schott, Juliane W.; Schwarzer, Adrian; Gofnet, Christine; Goff, Stephen P.; Schambach, Axel
: 2017
: Articles
: LentivirusesStem cellsPeptidylprolyl isomeraseRetroviruses

31. Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes

: Kribelbauer, Judith F.; Laptenko, Oleg; Chen, Siying; Martini, Gabriella D.; Freed-Pastor, William Allen; Prives, Carol L.; Mann, Richard S.; Bussemaker, Harmen J.
: 2017
: Articles
: DNA--MethylationTranscription factorsGenetic regulationDNA-protein interactionsEpigenetics

32. Regulation of Release Factor 2 in Non-canonical Translation Pathways

: Huang, Bridget Yih Jiin
: 2017
: Theses
: Bacterial proteinsRibosomesBiochemistryProteins--SynthesisBiophysics

33. RPGRIP1L and FTO – genes implicated in the effects of FTO intronic sequence variants on food intake – also affect adipogenesis and adipocyte biology.

: Martin-Carli, Jayne Frances
: 2017
: Theses
: BiochemistryCytologyMolecular biologyObesity--Genetic aspects

34. Sensing and Processing of DNA Interstrand Crosslinks by the Mismatch Repair Pathway

: Kato, Niyo; Kawasoe, Yoshitaka; Williams, Hannah; Coates, Elena Lauren; Roy, Upasana; Shi, Yuqian; Beese, Lorena S.; Scharer, Orlando D.; Yan, Hong; Gottesman, Maxwell E.; Takahashi, Tatsuro S.; Gautier, Jean J.
: 2017
: Articles
: Crosslinked polymersDNA repairMolecular biologyDNA

35. Systematic, network-based characterization of therapeutic target inhibitors

: Shen, Yao; Alvarez, Mariano; Bisikirska, Brygida; Lachmann, Alexander; Realubit, Ronald B.; Pampou, Sergey Yu; Coku, Jorida; Karan Jr., Charles; Califano, Andrea
: 2017
: Articles
: TherapeuticsGene expressionComputational biologyBioinformatics

36. The T-cell leukemia related rpl10-R98S mutant traps the 60S export adapter Nmd3 in the ribosomal P site in yeast

: Patchett, Stephanie; Musalgaonkar, Sharmishtha; Malyutin, Andrey; Johnson, Arlen W.
: 2017
: Articles
: T cellsRibosomesGeneticsLymphoblastic leukemiaMolecular biology

37. A computational interactome and functional annotation for the human proteome

: Garzon Canas, Jose I.; Deng, Lei; Murray, Diana; Shapira, Sagi; Petrey, Donald S.; Honig, Barry
: 2016
: Articles
: Computational biologyProteomicsProtein-protein interactionsSystems biology

38. A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions

: Stockman, Victoria B.; Ghamsari, Lila; Lasso Cabrera, Gorka; Honig, Barry; Shapira, Sagi; Wang, Harris H.
: 2016
: Articles
: RNAMammals--Molecular geneticsNucleotide sequenceSystems biologyMolecular geneticsCloningGeneticsBiology--Classification

39. ALS-associated mutant FUS induces selective motor neuron degeneration through toxic gain of function

: Sharma, Aarti; Lyashchenko, Alexander K.; Lu, Lei; Ebrahimi Nasrabady, Sara; Elmaleh, Margot; Mendelsohn, Monica; Nemes, Adriana; Tapia, Juan Carlos; Mentis, George Z.; Shneider, Neil
: 2016
: Articles
: Nervous system--Degeneration--Molecular aspectsAmyotrophic lateral sclerosisNeurologyMedicineMolecular biologyNeurosciences

40. An Automated Microwell Platform for Large-Scale Single Cell RNA-Seq

: Yuan, Jinzhou; Sims, Peter A.
: 2016
: Articles
: Nucleotide sequenceGene expression

41. A Sixth Modality of Infectious Disease: Contagious Cancer from Devils to Clams and Beyond

: Metzger, Michael; Goff, Stephen P.
: 2016
: Articles
: Parasites--EvolutionCancerImmunologic diseasesEpidemiology

42. Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8

: Soto, Cinque; Ofek, Gilad; Joyce, M. Gordon; Zhang, Baoshan; McKee, Krisha; Longo, Nancy S.; Yang, Yongping; Huang, Jinghe; Parks, Robert; Eudailey, Joshua; Lloyd, Krissey E.; Alam, S. Munir; Haynes, Barton F.; Mullikin, James C.; Connors, Mark; Mascola, John R.; Shapiro, Lawrence S.; Kwong, Peter D.; NISC Comparative Sequencing Program
: 2016
: Articles
: Neutralization (Chemistry)ImmunoglobulinsPhylogenyHIV infectionsBiochemistryBiology

43. Molecular basis of sidekick-mediated cell-cell adhesion and specificity

: Goodman, Kerry; Yamagata, Masahito; Jin, Xiangshu; Mannepalli, Seetha M.; Katsamba, Phinikoula S.; Ahlsen, Goran; Sergeeva, Alina P.; Honig, Barry; Sanes, Joshua R.; Shapiro, Lawrence S.
: 2016
: Articles
: NeurosciencesCell interactionCell adhesionMolecular biology

44. Oxidative Folding in Bacteria: Studies Using Single Molecule Force Spectroscopy

: Kahn, Thomas
: 2016
: Theses
: Protein foldingOxidoreductasesEscherichia coli--PhysiologyOxidationBiophysicsBiochemistry

45. PLATE-Seq: An Efficient and Scalable Method for Using RNA-Seq as a Primary Output in High Throughput Drug Screens

: Ray, Forest
: 2016
: Theses
: Drugs--EffectivenessHigh throughput screening (Drug development)Gene expression--Research--MethodologyBiology

46. Restriction of HIV-1-based lentiviral vectors in adult primary marrow-derived and peripheral mobilized human CD34+ hematopoietic stem and progenitor cells occurs prior to viral DNA integration

: Griffin, Daniel; Goff, Stephen P.
: 2016
: Articles
: Gene therapyLentivirusesStem cellsHIV infectionsMolecular biology

47. Structural basis of suppression of host translation termination by Moloney Murine Leukemia Virus

: Tang, Xuhua; Zhu, Yiping; Baker, Stacey L.; Bowler, Matthew W.; Chen, Benjamin Jieming; Chen, Chen; Hogg, J. Robert; Goff, Stephen P.; Song, Haiwei
: 2016
: Articles
: Mouse leukemia virusesReverse transcriptaseMolecular biologyVirologyBiophysicsGenetic translation

48. Structural Studies of a Mammalian Epithelial Calcium Channel

: Saotome, Kei
: 2016
: Theses
: Calcium--Physiological effectBiochemistryTRP channelsCalcium channels

49. Targeted Isolation of Antibodies Directed against Major Sites of SIV Env Vulnerability

: Mason, Rosemarie D.; Welles, Hugh C.; Adams, Cameron; Chakrabarti, Bimal K.; Gorman, Jason; Zhou, Tongqing; Nguyen, Richard; O’Dell, Sijy; Lusvarghi, Sabrina; Bewley, Carole A.; Li, Hui; Shaw, George M.; Sheng, Zizhang; Shapiro, Lawrence S.; Wyatt, Richard; Kwong, Peter D.; Mascola, John R.; Roederer, Mario
: 2016
: Articles
: HIV infections—PreventionImmunotherapySimian immunodeficiency virusPublic healthVirologyImmunology

50. The Role of the Clustered Protocadherins in the Assembly of Olfactory Neural Circuits

: Mountoufaris, George
: 2016
: Theses
: Olfactory nerveCadherinsNeural circuitryNeurosciences

51. Understanding complex biomolecular systems through the synergy of molecular dynamics simulations, NMR spectroscopy and X-Ray crystallography

: Zeiske, Tim
: 2016
: Theses
: Molecular dynamics--Simulation methodsMolecular dynamics--Computer simulationNuclear magnetic resonance spectroscopyBiomolecules--Computer simulationX-ray crystallographyMacromolecules--StructureMolecular dynamicsBiophysicsBiochemistry

52. What Is a Genome?

: Goldman, Aaron David; Landweber, Laura
: 2016
: Articles
: Genomics--Data processingCell physiologyGenomesGeneticsMolecular biology

53. A Competition Mechanism for a Homeotic Neuron Identity Transformation in Caenorhabditis Elegans

: Gordon, Patricia Marie
: 2015
: Theses
: Caenorhabditis elegansCaenorhabditis elegans--GeneticsCell divisionCell differentiationHomeobox genes

54. Activation of GTP hydrolysis in mRNA-tRNA translocation by elongation factor G

: Li, Wen; Liu, Zheng; Koripella, Ravi Kiran; Langlois, Robert; Sanyal, Suparna; Frank, Joachim
: 2015
: Articles
: HydrolysisRibosomesGuanosine triphosphataseMolecular biologyBiochemistry

55. A Kazal-Type Serine Protease Inhibitor from the Defense Gland Secretion of the Subterranean Termite Coptotermes formosanus Shiraki

: Negulescu, Horia; Guo, Youzhong; Garner, Thomas P.; Goodwin, Octavia Y.; Henderson, Gregg; Laine, Roger A.; Macnaughtan, Megan A.
: 2015
: Articles
: Proteins--StructureProteins--SecretionRhinotermitidaeAmino acid sequenceProtease inhibitorsFormosan subterranean termiteBiochemistryEntomology

56. Efferent Vestibular Neurons Show Homogenous Discharge Output But Heterogeneous Synaptic Input Profile In Vitro

: Mathews, Miranda A.; Murray, Andrew; Wijesinghe, Rajiv; Cullen, Karen; Tung, Victoria W. K.; Camp, Aaron J.
: 2015
: Articles
: NeuronsAction potentials (Electrophysiology)Neural transmissionMembrane potentials (Electrophysiology)Vestibular nucleiNeurosciences

57. Identifying candidate drivers of alcohol dependence-induced excessive drinking by assembly and interrogation of brain-specific regulatory networks

: Repunte-Canonigo, Vez; Shin, William Kihoon; Vendruscolo, Leandro F.; Lefebvre, Celine; van der Stap, Lena; Kawamura, Tomoya; Schlosburg, Joel E.; Alvarez, Mariano Javier; Koob, George F.; Califano, Andrea; Sanno, Pietro Paolo
: 2015
: Articles
: Gene regulatory networksAlcoholismBiology--Classification

58. Membrane potential and Ca2+ concentration dependence on pressure and vasoactive agents in arterial smooth muscle: A model

: Karlin, Arthur
: 2015
: Articles
: Molecular biologyBiochemistryPhysiology

59. Molecular Evolution and Genetic Analysis of the Major Capsid Protein VP1 of Duck Hepatitis A Viruses: Implications for Antigenic Stability

: Ma, Xiuli; Sheng, Zizhang; Huang, Bing; Qi, Lihong; Li, Yufeng; Yu, Kexiang; Liu, Cunxia; Qin, Zhuoming; Wang, Dan; Song, Minxun; Li, Feng
: 2015
: Articles
: Ducks--MortalityViruses--EvolutionEvolutionary geneticsImmune serumsHepatitis A virusEvolution (Biology)GeneticsAnimals--Diseases

60. Nuclear matrix protein Matrin 3 is a regulator of ZAP-mediated retroviral restriction

: Erazo, Angela; Goff, Stephen P.
: 2015
: Articles
: Gene expressionNuclear matrixRetrovirusesAntiretroviral agentsMolecular biologyBiochemistry

61. Regulation of Transcription Elongation and Termination

: Washburn, Robert; Gottesman, Max E.
: 2015
: Articles
: Genetic transcriptionBiomoleculesBiomolecules--StructureMicrobiology

62. The CUL4-DDB1 ubiquitin ligase complex controls adult and embryonic stem cell differentiation and homeostasis

: Gao, Jie; Buckley, Shannon M.; Cimmino, Luisa; Guillamot, Maria; Strikoudis, Alexandros; Cang, Yong; Goff, Stephen P.; Aifantis, Iannis
: 2015
: Articles
: UbiquitinMolecular biologyStem cellsCell differentiationHematopoiesisRegenerative medicine

63. Allele-Specific Knockdown of ALS-Associated Mutant TDP-43 in Neural Stem Cells Derived from Induced Pluripotent Stem Cells

: Nishimura, Agnes L.; Scotter, Emma L.; Abdelgany, Amr; Shum, Carole; Sardone, Valentina; Wright, Jamie; Lee, Youn-Bok; Chen, Han-Jou; Bilican, Bilada; Carrasco, Monica; Maniatis, Tom; Chandran, Siddharthan; Gallo, Jean-Marc; Rogelj, Boris; Shaw, Christopher E.
: 2014
: Articles
: Neural stem cellsCell differentiationSmall interfering RNAMorphology

64. Asynchronous Transcriptional Silencing of Individual Retroviral Genomes in Embryonic Cells

: Schlesinger, Sharon; Meshorer, Eran; Goff, Stephen P.
: 2014
: Articles
: CytologyGeneticsVirology

65. Concentration-Dependent Exchange of Replication Protein A on Single-Stranded DNA Revealed by Single-Molecule Imaging

: Gibb, Bryan; Ye, Ling Feng; Gergoudis, Stephanie C.; Kwon, YoungHo; Niu, Hengyao; Sung, Patrick; Greene, Eric C.
: 2014
: Articles
: Protein bindingDNA--MetabolismSaccharomyces cerevisiae--GeneticsGenetics

66. Kinematic Responses to Changes in Walking Orientation and Gravitational Load in Drosophila melanogaster

: Mendes, Cesar; Rajendren, Soumya V.; Bartos, Imre; Marka, Szabolcs; Mann, Richard S.
: 2014
: Articles
: WalkingInsects--LocomotionDrosophila melanogasterEntomologyNeurosciencesKinesiology

67. Learning from cadherin structures and sequences: affinity determinants and protein architecture

: Felsovalyi, Klara
: 2014
: Theses
: Protein bindingCadherinsBiochemistryBioinformaticsBiophysics

68. Mechanisms for Taste Sensation of Carbonation

: Yarmolinsky, David
: 2014
: Theses
: BiologyNeurosciences

69. Membrane Interaction of Bound Ligands Contributes to the Negative Binding Cooperativity of the EGF Receptor

: Arkhipov, Anton; Shan, Yibing; Kim, Eric T.; Shaw, David Elliot
: 2014
: Articles
: Cell membranesCrystals--StructureDimersBiochemistry

70. Single-Cell Identity Generated by Combinatorial Homophilic Interactions between α, β, and γ Protocadherins

: Thu, Chan Aye; Chen, Weisheng; Rubinstein, Rotem; Chevee, Maxime; Wolcott, Holly N.; Felsovalyi, Klara O.; Tapia, Juan Carlos; Shapiro, Lawrence S.; Honig, Barry; Maniatis, Tom
: 2014
: Articles
: Cellular recognitionNeuronsCytologyCadherinsNeurosciences

71. Structural and biophysical characterization of protocadherin extracellular regions

: Wolcott, Holly Noelle
: 2014
: Theses
: BiochemistryBiophysics

72. Accelerating the Original Profile Kernel

: Hamp, Tobias; Goldberg, Tatyana; Rost, Burkhard
: 2013
: Articles
: Pattern recognition systemsKernel functionsProteins--Analysis--MethodologyMolecular biology

73. Astrocyte pathology and the absence of non-cell autonomy in an induced pluripotent stem cell model of TDP-43 proteinopathy

: Serio, Andrea; Bilican, Bilada; Barmada, Sami J.; Ando, Dale Michael; Zhao, Chen; Siller, Rick; Burr, Karen; Haghi, Ghazal; Story, David; Nishimura, Agnes Lumi; Carrasco, Monica A.; Phatnani, Hemali P.; Shum, Carole; Wilmut, Ian; Maniatis, Tom; Shaw, Christopher E.; Finkbeiner, Steven; Chandran, Siddharthan
: 2013
: Articles
: NeurosciencesBiochemistry

74. Bacterial Adaptation through Loss of Function

: Hottes, Alison K.; Freddolino, Peter L.; Khare, Anupama; Donnell, Zachary N.; Liu, Julia C.; Tavazoie, Saeed
: 2013
: Articles
: Microbial mutationNonsense mutationBacteriaGeneticsMicrobiologyBiology--Classification

75. CysZ: Structural and Functional Studies of a Novel Sulfate Transport Protein

: Assur, Zahra
: 2013
: Theses
: CytologyCarrier proteinsBiochemistryBiophysics

76. Differential effects of natural rewards and pain on vesicular glutamate transporter expression in the nucleus accumbens

: Manders, Toby R.; Ziff, Edward B.; Wang, Jing; Turkey, David S.; Lee, Michelle; Xu, Duo; Eberle, Sarah E.; Goffer, Yossef
: 2013
: Articles
: BiochemistryNeurosciences

77. Distinctive Genes Determine Different Intramuscular Fat and Muscle Fiber Ratios of the longissimus dorsi Muscles in Jinhua and Landrace Pigs

: Wu, Ting; Zhang, Zhenhai; Yuan, Zhanqin; Lo, Li Jan; Chen, Jun; Wang, Yizhen; Peng, Jinrong
: 2013
: Articles
: Swine--GeneticsMeat--QualityGene expressionGenetic regulationSwine--AnatomyGeneticsVeterinary medicine

78. Divergent Transcriptional Regulatory Logic at the Intersection of Tissue Growth and Developmental Patterning

: Slattery, Matthew; Voutev, Roumen; Ma, Lijia; Nègre, Nicolas; White, Kevin P.; Mann, Richard S.
: 2013
: Articles
: Genetic transcription--RegulationDevelopmental biologyDevelopmental geneticsTissues--GrowthGeneticsMolecular biology

79. Genetic analysis of novel regulators of neuronal migration in Caenorhabditis elegans: the insulin/IGF-1 signaling pathway, a chromatin-binding factor ZFP-1 (AF10) and endogenous RNAi

: Kennedy, Lisa Michelle
: 2013
: Theses
: Genetics

80. Genetic and Functional Modularity of Hox Activities in the Specification of Limb-Innervating Motor Neurons

: Lacombe, Julie; Hanley, Olivia; Jung, Heekyung; Philippidou, Polyxeni; Surmeli, Gulsen; Dasen, Jeremy S.; Grinstein, Jonathan
: 2013
: Articles
: Motor neuronsNeuronsNeural circuitryNeurogeneticsHomeobox genesGenetics

81. Homology-based inference sets the bar high for protein function prediction

: Rost, Burkhard; Roos, Manfred; Mahlich, Yannick; Landerer, Cedric; Krompass, Denis; Kiening, Michael; Kaufman, Stefanie; Hönigschmid, Peter; Hopf, Thomas A.; Hamp, Tobias; Kassner, Rebecca; Seemayer, Sefan; Vicedo, Esmeralda; Schaefer, Christian; Achten, Dominik; Auer, Florian; Boehm, Ariane; Braun, Tatjana; Hecht, Maximilian; Heron, Mark
: 2013
: Articles
: Bioinformatics

82. Orientations and Proximities of the Extracellular Ends of Transmembrane Helices S0 and S4 in Open and Closed BK Potassium Channels

: Niu, Xiaowei; Liu, Guoxia; Wu, Roland; Chudasama, Neelesh; Zakharov, Sergey; Karlin, Arthur; Marx, Steven O.
: 2013
: Articles
: BiochemistryMolecular biologyBiophysicsMedicine

83. Players in the silencing of retroviral DNAs in embryonic stem cells

: Schlesinger, Sharon; Wang, Gary Zhe; Lee, Andreia H.; Goff, Stephen P.
: 2013
: Presentations (Communicative Events)
: Retrovirus infectionsGene silencingEmbryonic stem cellsVirologyMolecular biology

84. Proviral Silencing in Embryonic Cells is Regulated by Yin Yang 1

: Schlesinger, Sharon; Lee, Andreia H.; Wang, Gary Zhe; Green, Lisa; Goff, Stephen P.
: 2013
: Articles
: CytologyVirologyGenetics

85. Quantification of gait parameters in freely walking wild type and sensory deprived Drosophila melanogaster

: Mendes, Cesar; Bartos, Imre; Akay, Turgay; Marka, Szabolcs; Mann, Richard S.
: 2013
: Articles
: BiochemistryBiophysicsNeurosciences

86. Role of SUMO-1 and SUMO Interacting Motifs in Rhesus TRIM5α-mediated Restriction

: Lukic, Zana; Arriagada, Gloria; Goff, Stephen P.; Campbell, Edward M.
: 2013
: Articles
: Molecular biologyVirology

87. Synaptic State Matching: A Dynamical Architecture for Predictive Internal Representation and Feature Detection

: Tavazoie, Saeed
: 2013
: Articles
: Neural networks (Neurobiology)SynapsesPerceptual-motor processesMolecular biologyBiophysicsNeurosciences

88. Synonymous site conservation in the HIV-1 genome

: Mayrose, Itay; Stern, Adi; Burdelova, Ela; Sabo, Yosef; Laham-Karam, Nihay; Zamostiano, Rachel; Bacharach, Eran; Pupko, Tal
: 2013
: Articles
: HIV (Viruses)GenomicsGeneticsBiology

89. Thermal adaptation of conformational dynamics in ribonuclease H

: Stafford, Kate
: 2013
: Theses
: Biochemistry

90. Thermal Adaptation of Conformational Dynamics in Ribonuclease H

: Stafford, Kate A.; Robustelli, Paul; Palmer III, Arthur G,
: 2013
: Articles
: BiothermodynamicsProteins--StabilityRibonucleasesMolecular biology

91. Tumor-associated T cell receptor repertoires in low- and high-grade gliomas

: Sims, Jennifer S.; Grinshpun, Boris; Amendolara, Benjamin; Shen, Yufeng; Canoll, Peter D.; Sims, Peter A.; Bruce, Jeffrey N.
: 2013
: Presentations (Communicative Events)
: AstrocytomasGliomasT cells--ReceptorsExcision (Surgery)Cancer--SurgeryGlioblastoma multiformeOncologySurgeryMedicine

92. An Analysis of the Essential Chromatin Factor Zinc Finger Protein 1 (ZFP-1), and a Study of the Involvement of RNAi factors in Histone Processing in Caenorabditis Elegans

: Anastasiades Avgousti, Daphne Christina
: 2012
: Theses
: BiochemistryBiophysicsCaenorhabditis elegansChromatinHistonesRNANucleosomes

93. A Survey of 6,300 Genomic Fragments for cis-Regulatory Activity in the Imaginal Discs of Drosophila melanogaster

: Jory, Aurelie E.; Estella, Carlos; Giorgianni, Matt W.; Slattery, Matthew; Laverty, Todd R.; Rubin, Gerald M.; Mann, Richard S.
: 2012
: Articles
: Genetics

94. Basal-like breast cancer: modeling its initiation and characterizing novel EGFR variants

: Pires, Maira Moura
: 2012
: Theses
: BiologyOncologyBreast--CancerTumor suppressor proteinsCarcinogenesis

95. Deep sequencing with longitudinal sampling of a VRC01-like-antibody response in a chronically infected individual

: Mascola, J. R.; Kwong, P. D.; Mullikin, J. C.; Wu, L.; Nabel, G. J.; Connors, M.; NISC, C.; Zhang, Z.; Zhang, B.; Zhu, J.; Longo, N.; Wu, X.; Shapiro, Lawrence S.
: 2012
: Presentations (Communicative Events)
: Nucleotide sequenceLongitudinal methodHIV antibodiesVirologyMolecular biology

96. Developmental Regulation of Chromatin Conformation by Hox Proteins in Drosophila

: Angelopoulos, Marios; McKay, Daniel J.; Mann, Richard S.
: 2012
: Articles
: BiochemistryBiophysics

97. Mechanochemical Methods for Single Molecule Biochemistry and Studies of Thiol-Disulfide Exchange in Proteins

: Kosuri, Pallav
: 2012
: Theses
: BiophysicsBiochemistryBiology

98. PrePPI: a structure-informed database of protein–protein interactions

: Zhang, Qiangfeng Cliff; Petrey, Donald S.; Garzon Canas, Jose I.; Deng, Lei; Honig, Barry
: 2012
: Articles
: BiochemistryMolecular biologyBiomedical engineering

99. Structural Determinants of DNA-binding Specificity for Hox Proteins

: Liu, Peng
: 2012
: Theses
: BiophysicsBioinformatics

100. Structural Plasticity and Conformational Transitions of HIV Envelope Glycoprotein gp120

: Korkut, Anil; Hendrickson, Wayne A.
: 2012
: Articles
: HIV infectionsGlycoproteinsProteins--StructureBiochemistry

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