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1. Accurate and Sensitive Quantification of Protein-DNA Binding Affinity

Rastogi, Chaitanya
2017
Theses
GeneticsBiophysicsStatisticsDNA-protein interactionsTranscription factors

2. Advanced Analysis Algorithms for Microscopy Images

He, Siheng
2015
Theses
Image analysisBiomedical engineeringMicroscopes--TechniqueImage processingMicroscopyBiophysics

3. Advances in structure and small molecule docking predictions for crystallized G-Protein coupled receptors

Goldfeld, Dahlia A.
2013
Theses
ChemistryBiophysics

4. Allosteric Coupling, Nucleotide Binding and ATP Hydrolysis by Hsp70 Chaperones on a Structural Basis

Wang, Wei
2018
Theses
BiologyBiochemistryBiophysicsAllosteric regulationHeat shock proteins

5. A Multiphasic-Fluid-Structure Interaction Formulation Based on Mixture Theory and Its Finite Element Implementation in FEBio

Shim, Jay Jayne
2021
Theses
BiomechanicsBiophysics

6. An Analysis of the Essential Chromatin Factor Zinc Finger Protein 1 (ZFP-1), and a Study of the Involvement of RNAi factors in Histone Processing in Caenorabditis Elegans

Anastasiades Avgousti, Daphne Christina
2012
Theses
BiochemistryBiophysicsCaenorhabditis elegansChromatinHistonesRNANucleosomes

7. Antibody loop modeling methods and applications

Murrett, Colleen
2015
Theses
HIV antibodiesHomology (Biology)Proteins--Structure--Mathematical modelsAlgorithmsChemistryBiophysics

8. Assembly in Dynamic Nanoscale Systems

Lam, Amy Tsui-Chi
2015
Theses
Ultrastructure (Biology)MicrotubulesNanoscienceNanotechnologyBiophysicsBiomedical engineering

9. Biomaterial-based Cell Culture Platform for Podocyte Phenotype Study with Shape and Substrate Rigidity Control

Hu, Mufeng
2016
Theses
Kidneys--PhysiologyBiomedical materialsCell culture--Equipment and suppliesBiomedical engineeringBiophysics

10. Biomolecular NMR spectroscopy: Application to the study of the piRNA-pathway protein GTSF1, and backbone and side-chain spin relaxation methods development

O'Brien, Paul
2019
Theses
BiophysicsBiochemistryNuclear magnetic resonance spectroscopyProteins--StructureMolecular dynamics

11. Biophysical and anthropogenic contributions to fire disturbance dynamics on the peat-swamp landscape, Indonesia

Cattau, Megan E.
2016
Theses
Peatland ecologyFiresFire managementBiophysicsEcologyEnvironmental sciencesEnvironmental management

12. Carbon nanotube field-effect sensors for single-molecule detection

Sorgenfrei, Sebastian
2011
Theses
Electrical engineeringBiophysicsNanotechnologyCarbon nanotubesDetectors

13. Characterization of cardiac IKs channel gating using voltage clamp fluorometry

Osteen, Jeremiah Dane
2012
Theses
Biophysics

14. Cryo-electron microscopy and single particle reconstructions of the Leishmania major ribosome and of the encephalomyocarditis virus internal ribosome entry site bound to the 40S subunit

Jobe, Amy Beth
2017
Theses
Electron microscopyRibosomesLeishmaniaRNACryoelectronicsBiologyBiochemistryBiophysics

15. Cryo-electron microscopy studies of dynamical features of ribosomes during the translation process

Sun, Ming
2016
Theses
BiophysicsProteins--StructureRibosomes--StructureRibosomesCryoelectronicsBiologyBiochemistry

16. Cryo-EM and time-resolved cryo-EM studies on translation

Chen, Bo
2015
Theses
RibosomesProteins--SynthesisGenetic translationElectron microscopyBiophysicsBiology

17. CysZ: Structural and Functional Studies of a Novel Sulfate Transport Protein

Assur, Zahra
2013
Theses
CytologyCarrier proteinsBiochemistryBiophysics

18. Density-Dependent Mu Opioid Receptor Function Revealed by Single-Molecule Microscopy

Holsey, Michael David
2019
Theses
BiophysicsCytologyNeurosciencesOpioids--ReceptorsArrestinsOpioidsCell membranes

19. Designer Exons Inform a Biophysical Model for Exon Definition

Arias, Mauricio A.
2013
Theses
Exons (Genetics)Molecular biologyBiophysicsMessenger RNABiology

20. Development and application of chemical probes for vibrational imaging by stimulated Raman scattering

Hu, Fanghao
2017
Theses
Chemistry, Physical and theoreticalBiophysicsRaman effectVibration--MeasurementRaman spectroscopy

21. Development of next-generation voltage-gated calcium channel inhibitors using engineered nanobodies

Morgenstern, Travis James
2021
Theses
PharmacologyBiophysicsCytologyImmunoglobulinsProtein bindingCardiovascular system--Diseases--EtiologyNervous system--Diseases--Etiology

22. Directed Evolution of Protein Receptor Binding for Small Molecule Therapeutics Using Fluorescence Polarization

Bannier, Sean David
2021
Theses
ChemistryBiochemistryBiophysicsTetracylcinesProtein bindingPolarization (Light)Yeast

23. Dynamic Nuclear Polarization with Biradical Affinity Reagents

Rogawski, Rivkah
2018
Theses
BiophysicsChemistryBiochemistryPolarization (Nuclear physics)Biradicals

24. Dynamics of Stop-codon Recognition by Release Factor 1

Kinz-Thompson, Colin Donald
2016
Theses
Genetic translationRibosomesChemistryBiophysicsChemistry, Physical and theoretical

25. Dynamics of Translation Elongation in an mRNA Context with a High Frameshifting Propensity

Bailey, Nevette Adia
2019
Theses
BiophysicsRibosomesProteins--SynthesisGenetic translationMessenger RNATransfer RNA

26. Dysfunctional Sodium Channels and Arrhythmogenesis: Insights into the Molecular Regulation of Cardiac Sodium Channels Using Transgenic Mice

Abrams, Jeffrey
2017
Theses
BiophysicsSodium channelsTransgenic miceElectrophysiology

27. Electromechanical Coupling in Cells and Its Effects on Membrane Tension and Conductance

Jones Molina, John Anthony
2021
Theses
BiophysicsCytologyBiologyCell membranes

28. Elucidating the sequence and structural specificities of DNA-binding factors

Lazarovici, Allan
2014
Theses
BiophysicsCytology

29. Engineering Substrates for the Study of Cell Mechanical Interactions

Mathur, Anurag
2011
Theses
Biomedical engineeringBiophysicsMechanical engineering

30. Functional and Biochemical Characterization of KCNQ1/KCNE1 Subunit Interactions in the Cardiac IKs Potassium Channel

Chan, Priscilla Jay
2011
Theses
PharmacologyBiophysics

31. Gates and Latches: the mechanochemistry of ATP binding in kinesin 1 and Eg5

Behnke-Parks, William M.
2011
Theses
BiologyBiophysicsBiochemistryKinesinMechanical chemistryCell division

32. Gating mechanisms underlying deactivation slowing by atrial fibrillation mutations and small molecule activators of KCNQ1

Peng, Gary
2017
Theses
Atrial fibrillationPotassium channelsMembrane proteinsArrhythmia--PathophysiologyIon channelsBiophysics

33. How to steal ribosomes: structural studies of two different internal ribosome entry sites

Neupane, Ritam
2021
Theses
BiochemistryBiophysicsVirologyRibosomesEukaryotic cells

34. Identification and Biophysical Characterization of Small Molecules Modulating Protein Disulfide Isomerase in Neurodegenerative Diseases

Kaplan, Anna
2015
Theses
Nervous system--DegenerationNeuroprotective agentsProtein disulfide isomeraseBiophysicsBiochemistryBiology

35. Identification of Dendritic Processing in Spiking Neural Circuits

Slutskiy, Yevgeniy
2013
Theses
NeurosciencesElectrical engineeringBiophysics

36. Inhibition of Voltage-dependent Calcium Channels by Small G-proteins: Determinants, Mechanisms and Applications

Puckerin, Akil Anthony
2015
Theses
PharmacologyPhysiologyBiophysics

37. Inhibition stabilized network model in the primary visual cortex

Zhao, Jun
2012
Theses
NeurosciencesBiophysics

38. Integration of EGFR and LIN-12/Notch signaling in Vulval Precursor Cell fate specification in Caenorhabditis elegans

Underwood, Ryan
2018
Theses
BiochemistryMetazoaCell interactionCellular signal transductionBiophysics

39. Integrin-Linked Kinase, ECM Composition, and Substrate Rigidity Regulate Focal Adhesion - Actin Coupling, Modulating Survival, Proliferation and Migration: Towards a Biophysical Cancer Biomarker

Chander, Ashok Coil
2012
Theses
BiologyCytologyBiophysics

40. Investigation of Ribonuclease HI handle region dynamics using Solution-state nuclear magnetic resonance spectroscopy, Molecular Dynamic simulations and X-ray crystallography

Martin, James Arthur
2020
Theses
BiophysicsBiochemistryHIV (Viruses)Mouse leukemia virusesRNAEndonucleasesNuclear magnetic resonance spectroscopy

41. Investigation of Slow Dynamics in Proteins: NMR Pulse Sequence Development and Application in Triosephosphate Isomerase

Li, Wenbo
2012
Theses
Biophysics

42. Learning from cadherin structures and sequences: affinity determinants and protein architecture

Felsovalyi, Klara
2014
Theses
Protein bindingCadherinsBiochemistryBioinformaticsBiophysics

43. Ligand-Protein Interactions in Cytochromes

Catalano, Jaclyn
2011
Theses
ChemistryBiochemistryBiophysics

44. Mathematically Modeling the Mechanics of Cell Division

Wang, Shuyuan
2018
Theses
PhysicsBiophysicsCell divisionCytokinesis--Mathematical modelsCells--Mechanical properties

45. Mechanical Regulation in Cell Division and in Neurotransmitter Release

Thiyagarajan, Sathish
2018
Theses
PhysicsBiophysicsCytologyCell divisionNeurotransmitters

46. Mechanics of Epithelial Tissue Morphogenesis

Wang, Xun
2021
Theses
Mechanical engineeringBiomechanicsBiophysicsMorphogenesis--Molecular aspectsDrosophila melanogasterEpithelial cellsEmbryologyGuinea pigsAbnormalities, HumanWound healingMetastasis

47. Mechanics of Gram-positive bacterial cell adhesion

Echelman, Daniel Jay
2018
Theses
BiophysicsNanoscienceMicrobiologyCell adhesion--Molecular aspectsGram-positive bacteriaCells--Mechanical properties

48. Mechanisms of Actomyosin Contractility in Cells

Stachowiak, Matthew R.
2011
Theses
BiophysicsCytology

49. Mechanistic studies of ion binding and inactivation in the potassium channel KcsA by solid state NMR

Bhate, Manasi Prakash
2012
Theses
ChemistryBiophysics

50. Mechanochemical Methods for Single Molecule Biochemistry and Studies of Thiol-Disulfide Exchange in Proteins

Kosuri, Pallav
2012
Theses
BiophysicsBiochemistryBiology