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1. Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions

Yu, Jingzhi; Pacheco, Jennifer A.; Ghosh, Anika S.; Luo, Yuan; Weng, Chunhua; Shang, Ning; Benoit, Barbara; Carrell, David S.; Carroll, Robert J.; Dikilitas, Ozan; Freimuth, Robert R.; Gainer, Vivian S.; Hakonarson, Hakon; Hripcsak, George; Kullo, Iftikhar J.; Mentch, Frank; Peissig, Peggy L.; Ramirez, Andrea H.; Walton, Nephi; Wei, Wei-Qi; Rasmussen, Luke V.
2022
Articles
Medical records--Data processingPhenotypeGenetic algorithmsAlgorithms

2. PhenCards: a data resource linking human phenotype information to biomedical knowledge

Havrilla, James M.; Liu, Cong; Dong, Xiangchen; Weng, Chunhua; Wang, Kai
2021
Articles
PhenotypeNatural language processing (Computer science)Genetic disordersRare diseases

3. Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder

Peng, Jacqueline; Zhao, Mengge; Havrilla, James; Liu, Cong; Weng, Chunhua; Guthrie, Whitney; Schultz, Robert; Wang, Kai; Zhou, Yunyun
2020
Articles
Computational linguisticsMachine learningAutism spectrum disorders

4. A two-site survey of medical center personnel’s willingness to share clinical data for research: implications for reproducible health NLP research

Weng, Chunhua; Friedman, Carol; Rommel, Casey A.; Hurdle, John F.
2019
Articles
Clinical trials--Data processingMedical personnelNatural language processing

5. Complexities, variations, and errors of numbering within clinical notes: the potential impact on information extraction and cohort-identification

Hanauer, David A.; Mei, Qiaozhu; Vydiswaran, V. G. V.; Singh, Karandeep; Landis-Lewis, Zach; Weng, Chunhua
2019
Articles
LexicologyInformation servicesRoman numeralsClinical medicine--Language

6. Evaluation of the cost and effectiveness of diverse recruitment methods for a genetic screening study

Rasouly, Hila Milo; Wynn, Julia; Marasa, Maddalena; Reingold, Rachel; Chatterjee, Debanjana; Kapoor, Sheena; Piva, Stacy E.; Kil, Byum Hee; Mu, Xueru; Alvarez, Maria C.; Nestor, Jordan Gabriela; Mehl, Karla; Revah-Politi, Anya; Lippa, Natalie C.; Ernst, Michelle E.; Bier, Louise E.; Espinal, Aileen; Haser, Bianca; Sinha, Anoushka; Halim, Ian; Fasel, David; Cuneo, Nicole; Thompson, Jacqueline Jamir; Verbitsky, Miguel; Cohn, Elizabeth Gross; Goldman, Jill; Marder, Karen; Klitzman, Robert L.; Orjuela, Manuela A.; So, Yat S.; Fedotov, Alexander; Crew, Katherine; Kiryluk, Krzysztof; Appelbaum, Paul S.; Weng, Chunhua; Siegel, Karolynn; Gharavi, Ali G.; Chung, Wendy K.
2019
Articles
Genetics—ResearchResearch--Moral and ethical aspectsMulticulturalismPersonalized medicineMedicine--Research

7. Pathogenic Mutations in Cancer-Predisposing Genes: A Survey of 300 Patients with Whole-Genome Sequencing and Lifetime Electronic Health Records

He, Karen Y.; Zhao, Yiqing; McPherson, Elizabeth W.; Li, Quan; Wang, Kai; Xia, Fan; Weng, Chunhua; He, Max M.
2016
Articles
Human geneticsCancer--Genetic aspectsHuman genetics--Data processingMedical records--Data processingGenomicsMedicineGeneticsBioinformatics

8. Hidden in plain sight: bias towards sick patients when sampling patients with sufficient electronic health record data for research

Rusanov, Alexander; Weiskopf, Nicole Gray; Wang, Shuang; Weng, Chunhua
2014
Articles
Medical recordsMedical ethics

9. Using EHRs to integrate research with patient care: promises and challenges

Weng, Chunhua; Appelbaum, Paul S.; Hripcsak, George M.; Kronish, Ian M.; Busacca, Linda V.; Davidson, Karina W.; Bigger, John T.
2012
Articles
Knowledge acquisition (Expert systems)Clinical medicine--ResearchMedical records--Data processingMedicineBioinformaticsInformation technology

10. A Real-Time Screening Alert Improves Patient Recruitment Efficiency

Weng, Chunhua; Batres, Candido; Borda, Tomas; Weiskopf, Nicole Gray; Wilcox, Adam B.; Bigger, John T.; Davidson, Karina W.
2011
Articles
Clinical medicine--ResearchMedical screeningMedicineEpidemiologyInformation science