1. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data Berens, Philipp; Freeman, Jeremy; Deneux, Thomas; Chenkov, Nikolay; McColgan, Thomas; Speiser, Artur; Macke, Jakob H.; Turaga, Srinivas C.; Mineault, Patrick; Rupprecht, Peter; Gerhard, Stephan; Friedrich, Rainer W.; Friedrich, Johannes; Paninski, Liam; Pachitariu, Marius; Harris, Kenneth; Bolte, Ben; Machado, Timothy Aloysius; Ringach, Dario; Stone, Jasmine; Rogerson, Luke E.; Sofroniew, Nicolas J.; Reimer, Jacob; Froudarakis, Emmanouil; Euler, Thomas; Roson, Miroslav Roman; Theis, Lucas; Tolias, Andreas S.; Bethge, Matthias 2018 Articles Computational biologyAlgorithmsNeurosciencesComputer science
2. Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data Zhou, Pengcheng; Resendez, Shanna L.; Rodriguez-Romaguera, Jose; Jimenez, Jessica; Neufeld, Shay Q.; Giovannucci, Andrea; Friedrich, Johannes; Pnevmatikakis, Eftychios; Stuber, Garret D.; Hen, Rene; Kheirbek, Mazen A.; Sabatini, Bernardo L.; Kass, Robert E.; Paninski, Liam 2018 Articles NeurosciencesNeuronsBiometryEndoscopyStatistics
3. Electrical stimulus artifact cancellation and neural spike detection on large multi-electrode arrays Mena, Gonzalo Esteban; Grosberg, Lauren; Madugula, Sasidhar; Hottowy, Paweł; Litke, Alan; Cunningham, John Patrick; Chichilnisky, E. J.; Paninski, Liam 2017 Articles Computational biologyNeural stimulationStatistics
4. Fast online deconvolution of calcium imaging data Friedrich, Johannes; Zhou, Pengcheng; Paninski, Liam 2017 Articles CalciumAlgorithmsOptimizing compilersChemistry
5. Multi-scale approaches for high-speed imaging and analysis of large neural populations Friedrich, Johannes; Yang, Weijian; Soudry, Daniel; Mu, Yu; Ahrens, Misha B.; Yuste, Rafael; Peterka, Darcy S.; Paninski, Liam 2017 Articles Brain--ImagingNeurosciencesNeuronsComputational biology