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1. A sequential Monte Carlo algorithm for inference of subclonal structure in cancer

Ogundijo, Oyetunji Enoch; Zhu, Kaiyi; Wang, Xiaodong; Anastassiou, Dimitris
2019
Articles
Tumors--Growth--Mathematical modelsMonte Carlo methodOncology

2. Meta-analysis of expression and methylation signatures indicates a stress-related epigenetic mechanism in multiple neuropsychiatric disorders

Zhu, Kaiyi; Ou Yang, Tai-Hsien; Dorie, Vincent Joseph; Zheng, Tian; Anastassiou, Dimitris
2019
Articles
Neurobehavioral disordersPathologyEpigeneticsMethylationStress (Psychology)--Physiological aspectsSystems biology

3. Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants

Elmas, Abdulkadir; Ou Yang, Tai-Hsien; Wang, Xiaodong; Anastassiou, Dimitris
2016
Articles
Genomics--Data processingHuman genetics--Data processingChromosomesGene mappingSingle nucleotide polymorphismsGeneticsBiology--Classification

4. A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data

Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong
2014
Articles
Computational biologyGenomics--Data processingBioinformatics

5. Biomolecular Events in Cancer Revealed by Attractor Metagenes

Cheng, Wei-Yi; Ou Yang, Tai-Hsien; Anastassiou, Dimitris
2013
Articles
Gene expressionChromosomesBreast--CancerBiochemistry

6. Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA

Jajamovich, Guido H.; Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong
2013
Articles
BiometryDNA--Data processingGenetics—ResearchBioinformaticsGeneticsBiology

7. Notch and VEGF pathways play distinct but complementary roles in tumor angiogenesis

Hernandez, Sonia; Banerjee, Debarshi; Garcia, Alejandro; Kangsamaksin, Thaned; Cheng, Wei-Yi; Anastassiou, Dimitris; Funahashi, Yasuhiro; Kadenhe-Chiweshe, Angela; Shawber, Carrie; Kitajewski, Jan K.; Kandel, Jessica; Yamashiro, Darrell J.
2013
Articles
NeuroblastomaNeovascularizationBevacizumabVascular endothelial growth factorsMolecular biologyOncologyMedicine

8. Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data

Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong
2012
Articles
GeneticsBioinformatics

9. Human cancer cells express Slug-based epithelial-mesenchymal transition gene expression signature obtained in vivo

Anastassiou, Dimitris; Rumjantseva, Viktoria; Cheng, Weiyi; Huang, Jianzhong; Canoll, Peter D.; Yamashiro, Darrell; Kandel, Jessica J.
2011
Articles
Epithelial cellsMesenchymal stem cellsCancer invasivenessCancer cells--MotilityBiomechanicsOncologyMolecular biology

10. A haplotype inference algorithm for trios based on deterministic sampling

Wang, Xiaodong; Anastassiou, Dimitris; Iliandis, Alexandros; Watkinson, John
2010
Articles
GeneticsBioinformatics