Improved methodology to measure taxon-specific phosphate uptake in live and unfiltered samples

Talarmin, Agathe; Van Wambeke, France; Duhamel, Solange; Catala, Philippe; Moutin, Thierry; Lebaron, Philippe

Microorganisms play a major role in the marine phosphate biogeochemical cycle but the relative contribution of picoplanktonic groups is not well understood. Previous studies have shown that combining uptake measurements of radiolabeled dissolved inorganic phosphate (Pᵢ) substrate with cell sorting by flow cytometry is a powerful tool for the assessment of Pᵢ fluxes at the cell‐specific level. Nevertheless, using ³³P to trace Pᵢ uptake, we show that treatments involving fixation and filtration of the sorted groups (i.e., heterotrophic prokaryotes, Synechococcus and piconanophytoeukaryotes) induce leakage of radioactive Pᵢ (up to 50% of the signal), resulting in a sizeable underestimation of the taxon‐specific Pᵢ uptake. We suggest an alternative protocol, which significantly reduces this bias. Using this optimized protocol, the samples were treated with an excess of nonradioactive Pi to stop the incubation and sorted fractions were directly collected in microtubes for radioactivity counting, avoiding signal loss due to filtration. Sorted groups were strongly and differently impacted by fixation (0.5% PFA), with the exception of Synechococcus cells, which showed once a 10% lower signal in samples treated with the previously used protocols compared with samples treated with ours. Based on the integrity of the live sorted cells, our improved protocol provides reproducible and accurate estimations of the taxon‐specific Pᵢ uptake (≤ 11% variation on cellular uptake rates, sd/average, n = 69). It was successfully applied to P‐depleted oligotrophic seawater samples from the Mediterranean and will allow a comparison of taxon‐specific uptake rates between sites.


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Limnology and Oceanography: Methods

More About This Work

Academic Units
Lamont-Doherty Earth Observatory
Biology and Paleo Environment
Published Here
March 31, 2020