Academic Commons

Software

OCT Volume Stitching & Blending Toolbox

Gan, Yu; McLean, James Patrick; Hendon, Christine P.

This MATLAB code is used to register and fuse Thorlabs SD-OCT image volumes into a single mosaic volume. When the sample is too large to image with a single acquisition, multiple, overlapping volumes can be acquired and fused into a single fluid dataset. This code was written by Dr. Yu Gan and published in the following manuscript: Yu Gan, Wang Yao, Kristin. M Myers, Joy Y. Vink, Ronald. J. Wapner, and Christine P. Hendon, "Analyzing three-dimensional ultrastructure of human cervical tissue using optical coherence tomography," Biomed. Opt. Express 6, 1090-1108 (2015)

Files

  • thumnail for OCT_Stitching_Toolbox_standalone.zip OCT_Stitching_Toolbox_standalone.zip application/zip 3 MB Download File

More About This Work

Academic Units
Electrical Engineering
Published Here
February 16, 2021

Notes

Detailed instructions on using the code are provided in the zip file. This code has many parts which are specific to image acquisition using a Thorlabs TELESTO SD-OCT system and will need to be modified to work with other OCT systems.