2007 Data (Information)

Human pseudo exons, ~92000

Chasin, Lawrence Allen; Ke, Shengdong; Wang, Anthony

A list of pseudo exon sequences that we have used in our research on pre-mRNA splicing. About 92000 human pseudo exons (upper case) with 100 nt of flanks upstream and downstream (lower case). Limited to pseudo exons of size 50 to 250 nt. Defined as having an acceptor site consensus value score of >75 and a donor site with a consensus value score of >78, based on the method of Shapiro and Senapathy (0 = worst possible score, 100 = best possible score). Extracted from databases from around 2007. Treated to remove highly related sequences.