11. Confounding effects in gene expression and their impact on downstream analysis Lachmann, Alexander 2016 Theses Genetic regulationGenetic regulation--Data processingGene expressionGene expression--Data processingBioinformaticsGene regulatory networksGenetics
12. Genetics of ABCA4-associated Diseases and Retinitis Pigmentosa Xie, Yajing 2016 Theses Retinitis pigmentosaRetinitis pigmentosa--Genetic aspectsMedical geneticsRetinal degenerationGeneticsBioinformatics
13. Pathogenic Mutations in Cancer-Predisposing Genes: A Survey of 300 Patients with Whole-Genome Sequencing and Lifetime Electronic Health Records He, Karen Y.; Zhao, Yiqing; McPherson, Elizabeth W.; Li, Quan; Wang, Kai; Xia, Fan; Weng, Chunhua; He, Max M. 2016 Articles Human geneticsCancer--Genetic aspectsHuman genetics--Data processingMedical records--Data processingGenomicsMedicineGeneticsBioinformatics
14. ABC Transporters and the Proteasome Complex Are Implicated in Susceptibility to Stevens–Johnson Syndrome and Toxic Epidermal Necrolysis across Multiple Drugs Nicoletti, Paola; Bansal, Mukesh; Lefebvre, Celine; Guarnieri, Paolo; Shen, Yufeng; Pe’er, Itsik; Califano, Andrea; Floratos, Aristidis 2015 Articles Drugs--Side effectsATP-binding cassette transportersGene expressionGenetic regulationApoptosisToxic epidermal necrolysisBiology--ClassificationBioinformaticsGenetics
15. Identifying genes required for the formation of neurons from skin cells using forward genetic screens and whole genome sequencing in C. elegans Minevich, Gregory 2015 Theses Neurons--GrowthNeural stem cellsDevelopmental neurobiologyGene mappingGeneticsNeurosciencesBioinformatics
16. Reconstruction of novel transcription factor regulons through inference of their binding sites Elmas, Abdulkadir; Wang, Xiaodong; Samoilov, Michael S. 2015 Articles Comparative genomicsBioinformaticsGenomics--Data processingComputational biologyTranscription factorsElectrical engineeringGeneticsMolecular biologyMathematics
17. SeqMule: automated pipeline for analysis of human exome/genome sequencing data Guo, Yunfei; Ding, Xiaolei; Shen, Yufeng; Lyon, Gholson J.; Wang, Kai 2015 Articles Genomes--Data processingGeneticsSoftware engineeringBioinformaticsSystems biology
18. Aberrantly Expressed CeRNAs Account for Missing Genomic Variability of Cancer Genes via MicroRNA-Mediated Interactions Chiu, Hua-Sheng 2014 Theses CarcinogenesisOncogenesBioinformaticsRNABiology--ClassificationGenetics
19. Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information Giorgi, Federico M.; Lopez, Gonzalo; Woo, Jung H.; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh 2014 Articles Gene expressionGenetic algorithmsTranscription factorsBioinformaticsGeneticsMolecular biology
20. Transcriptome reconstruction and annotation of cynomolgus and African green monkey Lee, Albert Kim; Khiabanian, Hossein; Kugelman, Jeffrey; Elliott, Oliver T.; Nagle, Elyse; Yu, Guo-Yun; Warren, Travis; Palacios, Gustavo; Rabadan, Raul 2014 Articles BioinformaticsGenetics