Subject: Bioinformatics | Search Results

1. You Can’t Think and Hit at the Same Time: Neural Correlates of Baseball Pitch Classification

: Sajda, Paul; Muraskin, Jordan Scott; Sherwin, Jason Samuel
: 2012
: Articles
: BioinformaticsNeurosciencesBiomedical engineering

2. Whole-genome sequencing data of Kazakh individuals

: Kairov, Ulykbek; Molkenov, Askhat; Rakhimova, Saule; Kozhamkulov, Ulan; Sharip, Aigul; Karabayev, Daniyar; Daniyarov, Asset; H.Lee, Joseph; D.Terwilliger, Joseph; Akilzhanova, Ainur; Zhumadilov, Zhaxybay
: 2021
: Articles
: Human genomeGenomicsKazakhsPhenotypeBioinformatics

3. Whole-genome linkage analysis in mapping alcoholism genes using single-nucleotide polymorphisms and microsatellites

: Wang, Shuang; Huang, Song; Liu, Nianjun; Chen, Liang; Oh, Cheongeun; Zhao, Hongyu
: 2005
: Articles
: Microsatellites (Genetics)Gene mappingAlcoholism--Genetic aspectsSingle nucleotide polymorphismsBiometryBioinformaticsGenetics

4. viSNE and Wanderlust, two algorithms for the visualization and analysis of high-dimensional single-cell data

: Amir, El-ad David
: 2014
: Theses
: ImmunologyBioinformatics

5. Viral diversity and clonal evolution from unphased genomic data

: Khiabanian, Hossein; Carpenter, Zachary; Kugelman, Jeffrey; Chan, Joseph; Trifonov, Vladimir; Nagle, Elyse; Warren, Travis; Iversen, Patrick; Bavari, Sina; Palacios, Gustavo; Rabadan, Raul
: 2014
: Articles
: GenomicsCytologyBioinformatics

6. Variable window binding for mutually exclusive alternative splicing

: Anastassiou, Dimitris; Liu, Hairuo; Varadan, Vinay
: 2006
: Articles
: RNA splicingLocus of controlExons (Genetics)Messenger RNAGeneticsBioinformatics

7. Using interspecies biological networks to guide drug therapy

: Jacunski, Alexandra
: 2017
: Theses
: BioinformaticsCombination drug therapyDrug interactions

8. Using heterogeneous, longitudinal EHR data for risk assessment and early detection of cardiovascular disease

: Bhave, Shreyas Abhay
: 2024
: Theses
: BioinformaticsCardiovascular system--Diseases--DiagnosisCardiovascular system--Diseases--Risk factorsMedical records

9. Using electronic health records to understand COVID-19 risks

: Ramlall, Vijendra
: 2023
: Theses
: BioinformaticsCOVID-19 (Disease)--EpidemiologyCOVID-19 (Disease)--Data processingCOVID-19 (Disease)--Risk factorsRetinal degenerationBlood coagulation disorders

10. Using EHRs to integrate research with patient care: promises and challenges

: Weng, Chunhua; Appelbaum, Paul S.; Hripcsak, George M.; Kronish, Ian M.; Busacca, Linda V.; Davidson, Karina W.; Bigger, John T.
: 2012
: Articles
: Knowledge acquisition (Expert systems)Clinical medicine--ResearchMedical records--Data processingMedicineBioinformaticsInformation technology

11. Using contextual and lexical features to restructure and validate the classification of biomedical concepts

: Fan, Jung-Wei; Xu, Hua; Friedman, Carol
: 2007
: Articles
: Biology--SemioticsUMLSBioinformaticsBiomedical engineering

12. Use of informatics methods to identify problems and then design, develop and evaluate solutions to support health workers in their management of malaria...

: Carlo Unda, Maria Lorena
: 2016
: Theses
: Malaria--TreatmentBioinformaticsMillennium Villages (Project)User-centered system designHealth services administrationMalaria--PreventionInformation technologyComputer scienceMedical care

13. Understanding the Origins of a Pandemic Virus

: Hernandez, Carlos Xavier; Chan, Joseph M.; Khiabanian, Hossein; Rabadan, Raul
: 2011
: Articles
: Public healthBioinformatics

14. Understanding and Reducing Clinical Data Biases

: Fort, Daniel
: 2015
: Theses
: Bioinformatics

15. Transformer Models for Clinical Target Prediction using Pathology Report Text

: Kefeli, Jenna
: 2024
: Theses
: BioinformaticsMedical records--Data processingDiagnosisPathologyNosology

16. Transcriptome reconstruction and annotation of cynomolgus and African green monkey

: Lee, Albert Kim; Khiabanian, Hossein; Kugelman, Jeffrey; Elliott, Oliver T.; Nagle, Elyse; Yu, Guo-Yun; Warren, Travis; Palacios, Gustavo; Rabadan, Raul
: 2014
: Articles
: BioinformaticsGenetics

17. Transcriptional States and microRNA Regulation of Adult Neural Stem Cells

: DeLeo, Annina
: 2015
: Theses
: Molecular biologyNeurosciencesBioinformatics

18. Towards unified medical evidence computation from literature for evidence-based medicine

: Kang, Tian
: 2021
: Theses
: BioinformaticsMedical care--Mathematical modelsMedicine

19. Towards the integration of structural and systems biology: structure-based studies of protein-protein interactions on a genome-wide scale

: Zhang, Qiangfeng Cliff
: 2012
: Theses
: BioinformaticsBiophysicsSystems biologyProtein-protein interactionsGenomes

20. Toward a Generalized Model of Biomedical Query Mediation to Improve Electronic Health Record Data Retrieval

: Hruby, Gregory William
: 2016
: Theses
: Medical recordsBioinformaticsMedical electronicsMedical records--Data processingInformation science

21. Topics in Signal Processing: applications in genomics and genetics

: Elmas, Abdulkadir
: 2016
: Theses
: Signal processingSignal processing--Statistical methodsGenetics--Data processingGenomics--Data processingBioinformaticsTranscription factorsElectrical engineering

22. Topics in Genomic Signal Processing

: Jajamovich, Guido Hugo
: 2012
: Theses
: Electrical engineeringBioinformatics

23. Timing and Completeness of Trial Results Posted at ClinicalTrials.gov and Published in Journals

: Riveros, Carolina; Dechartres, Agnes; Perrodeau, Elodie; Haneef, Romana; Boutron, Isabelle; Ravaud, Philippe
: 2013
: Articles
: Clinical trials--Data processingBioinformaticsUnited States. Food and Drug Administration

24. Time-dependent information transmission in a model regulatory circuit

: Mancini, F.; Wiggins, Chris H.; Marsili, M.; Walczak, Aleksandra. M.
: 2013
: Articles
: MathematicsBioinformatics

25. The itaconate-driven immunometabolic response to S. aureus promotes persistent lung infection

: Tomlinson, Kira Leigh
: 2023
: Theses
: MicrobiologyImmunologyBioinformaticsStaphylococcus aureus infectionsBiofilmsGlycolysisPneumoniaNeutrophils--Immunology

26. The generation and phenotypic effect of human genetic mutations

: Chen, Chen
: 2018
: Theses
: BioinformaticsComputer scienceMutation (Biology)Human genetics--VariationMachine learning

27. The COMBREX Project: Design, Methodology, and Initial Results

: Anton, Brian P.; Chang, Yi-Chien; Brown, Peter; Choi, Han-Pil; Faller, Lina L.; Guleria, Jyotsna; Hu, Zhenjun; Klitgord, Niels; Levy-Moonshine, Ami; Maksad, Almaz; Mazumdar, Varun; McGettrick, Mark; Osmani, Lais; Pokrzywa, Revonda; Rachlin, John; Swaminathan, Rajeswari; Allen, Benjamin; Housman, Genevieve; Monahan, Caitlin; Rochussen, Krista; Tao, Kevin; Bhagwat, Ashok S.; Brenner, Steven E.; Columbus, Linda; de Crécy-Lagard, Valérie; Ferguson, Donald; Fomenkov, Alexey; Gadda, Giovanni; Morgan, Richard D.; Osterman, Andrei L.; Rodionov, Dmitry A.; Rodionova, Irina A.; Rudd, Kenneth E.; Söll, Dieter; Spain, James; Xu, Shuang-yong; Bateman, Alex; Blumenthal, Robert M.; Bollinger, J. Martin; Chang, Woo-Suk; Ferrer, Manuel; Friedberg, Iddo; Galperin, Michael Y.; Gobeill, Julien; Haft, Daniel; Hunt, John F.; Karp, Peter; Klimke, William; Krebs, Carsten; Macelis, Dana; Madupu, Ramana; Martin, Maria J.; Miller, Jeffrey H.; O'Donovan, Claire; Palsson, Bernhard; Ruch, Patrick; Setterdahl, Aaron; Sutton, Granger; Tate, John; Yakunin, Alexander; Tchigvintsev, Dmitri; Plata, German Alonso; Hu, Jie; Greiner, Russell; Horn, David; Sjölander, Kimmen; Salzberg, Steven L.; Vitkup, Dennis; Letovsky, Stanley; Segrè, Daniel; DeLisi, Charles; Roberts, Richard J.; Steffen, Martin; Kasif, Simon
: 2013
: Articles
: Nucleotide sequenceGenomics--Data processingMicrobial proteinsMolecular biologyMicrobiologyBioinformatics

28. The autophagosomal perspective: Tissue-specificity and cell-specificity of the autophagic response to starvation in vivo

: Yang, Young Joo
: 2020
: Theses
: Molecular biologyBioinformaticsVeterinary medicineAutophagic vacuoles

29. Systems-Level Approaches to Understanding Protein Synthesis

: Metz, Jordan Benjamin
: 2022
: Theses
: BiologyComputer scienceBioinformaticsNucleotide sequenceRibosomesProteins--Synthesis--RegulationRNA-protein interactionsAnimal models in research

30. Systems Genetics of DNA Damage Tolerance – Cisplatin, RAD5 & CRISPR-mediated Nonsense

: Bryant, Eric Edward
: 2019
: Theses
: GeneticsBioinformaticsBiology--ClassificationDNA damageCisplatinCRISPR (Genetics)

31. Systems Biology Approaches to The Study of Neurological Disorders and Somatic Cell Reprogramming

: Shin, William Kihoon
: 2016
: Theses
: Cell hybridizationCentral nervous system--DiseasesNervous system--DegenerationGenetic transcriptionBioinformaticsNeurosciencesBiology--Classification

32. Systems biology approaches to precision medicine

: He, Jing
: 2017
: Theses
: BioinformaticsCytologyComputer scienceSystems biologyMedicine

33. Systematic, network-based characterization of therapeutic target inhibitors

: Shen, Yao; Alvarez, Mariano; Bisikirska, Brygida; Lachmann, Alexander; Realubit, Ronald B.; Pampou, Sergey Yu; Coku, Jorida; Karan Jr., Charles; Califano, Andrea
: 2017
: Articles
: TherapeuticsGene expressionComputational biologyBioinformatics

34. Systematically Mapping the Epigenetic Context Dependence of Transcription Factor Binding

: Kribelbauer, Judith Franziska
: 2018
: Theses
: BiochemistryBioinformaticsBiophysicsTranscription factorsGene regulatory networksEpigenetics

35. Symmetry Based Multi-modality Registration of the Brain Imagery

: Liu, Xin; Imielinska, Celina Z.; Laine, Andrew F.; D'Ambrosio, Anthony Louis
: 2007
: Conference Objects
: Diagnostic imagingBioinformaticsNeurosciences

36. SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition

: Melvin, Iain; Ie, Eugene; Kuang, Rui; Weston, Jason; Noble, William; Leslie, Christina
: 2007
: Articles
: Proteins--StructureProtein foldingComputational biologyProteomicsBioinformatics

37. Survivin (BIRC5) Peptide Vaccine in the 4T1 Murine Mammary Tumor Model: A Potential Neoadjuvant T Cell Immunotherapy for Triple Negative Breast Cancer: A Preliminary Study

: Burkholz, Scott R.; Herst, Charles V.; Carback, Richard T.; Harris, Paul Emerson; Rubsamen, Reid M.
: 2023
: Articles
: Breast--Cancer--TreatmentImmunotherapyBioinformaticsHigh-throughput nucleotide sequencingMedicine

38. Structure-Function Relationships in the Human Visual System Using DTI, fMRI and Visual Field Testing: Pre- and Post-Operative Assessments in Patients with Anterior Visual Pathway Compression

: Rosiene, J.; Liu, Xin; D'Ambrosio, Anthony Louis; Hirsch, Joy; Bruce, Jeffrey N.; Ferrera, J.; Imielinska, Celina Z.
: 2006
: Reports
: BioinformaticsDiagnostic imagingNeurosciences

39. Structure Function Analysis of Drug Resistance Driver Mutations in Acute Lymphoblastic Leukemia

: Carpenter, Zachary Wayne
: 2017
: Theses
: Lymphoblastic leukemia in childrenPediatric hematologyBones--Cancer--TreatmentBone marrow--CancerDrug resistance in cancer cellsLymphoblastic leukemiaBioinformaticsOncologyPharmacology

40. Structure-Based Genome Scale Function Prediction and Reconstruction of the Mycobacterium tuberculosis Metabolic Network

: Konate, Mariam
: 2014
: Theses
: Bioinformatics

41. Structural Determinants of DNA-binding Specificity for Hox Proteins

: Liu, Peng
: 2012
: Theses
: BiophysicsBioinformatics

42. Spectral solutions to stochastic models of gene expression with bursts and regulation

: Mugler, Andrew; Walczak, Aleksandra M.; Wiggins, Chris H.
: 2009
: Articles
: MathematicsBioinformatics

43. Spatial and genomic analysis of the glioblastoma tumor microenvironment

: Chen, Andrew
: 2020
: Theses
: BiologyBioinformaticsGlioblastoma multiformeBrain--Cancer--ResearchCancer--Immunotherapy--EvaluationMacrophages--Research

44. Smartphone Applications to Support Tuberculosis Prevention and Treatment: Review and Evaluation

: Iribarren, Sarah J.; Schnall, Rebecca; Stone, Patricia W.; Carballo-Diéguez, Alex
: 2016
: Articles
: Medical careBioinformaticsBiomedical engineeringTuberculosis--PreventionWireless communication systems in medical careMedicine

45. Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data

: Greenfeld, Max; van de Meent, Jan-Willem; Pavlichin, Dmitri S.; Mabuchi, Hideo; Wiggins, Chris H.; Gonzalez Jr., Ruben L.; Herschlag, Daniel
: 2015
: Articles
: Computer filesBioinformatics

46. Simulating drug responses in laboratory test time series with deep generative modeling

: Yahi, Alexandre
: 2019
: Theses
: BioinformaticsPharmacologyDecision support systemsMachine learningNeural networks (Computer science)

47. SeqMule: automated pipeline for analysis of human exome/genome sequencing data

: Guo, Yunfei; Ding, Xiaolei; Shen, Yufeng; Lyon, Gholson J.; Wang, Kai
: 2015
: Articles
: Genomes--Data processingGeneticsSoftware engineeringBioinformaticsSystems biology

48. Semi-automated Color Segmentation of Anatomical Tissue

: Imielinska, Celina Z.; Downes, M. S.; Yuan, W.
: 2000
: Articles
: Diagnostic imagingBioinformaticsComputer science

49. ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data

: Dittmar, John; Reid, Robert J.D.; Rothstein, Rodney Joel
: 2010
: Articles
: Bioinformatics

50. SAVI: a statistical algorithm for variant frequency identification

: Trifonov, Vladimir; Pasqualucci, Laura; Tiacci, Enrico; Falini, Brunangelo; Rabadan, Raul
: 2013
: Articles
: Bayesian statistical decision theorySequence alignment (Bioinformatics)Gene frequency--Statistical methodsGeneticsBioinformaticsBiometry

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