1. 3D Pharmacophoric Similarity improves Multi Adverse Drug Event Identification in Pharmacovigilance Vilar Varela, Santiago; Tatonetti, Nicholas P.; Hripcsak, George M. 2015 Articles Drugs--Side effectsMedical careBioinformaticsMedicine
2. ABC Transporters and the Proteasome Complex Are Implicated in Susceptibility to Stevens–Johnson Syndrome and Toxic Epidermal Necrolysis across Multiple Drugs Nicoletti, Paola; Bansal, Mukesh; Lefebvre, Celine; Guarnieri, Paolo; Shen, Yufeng; Pe’er, Itsik; Califano, Andrea; Floratos, Aristidis 2015 Articles Drugs--Side effectsATP-binding cassette transportersGene expressionGenetic regulationApoptosisToxic epidermal necrolysisBiology--ClassificationBioinformaticsGenetics
3. Aberrantly Expressed CeRNAs Account for Missing Genomic Variability of Cancer Genes via MicroRNA-Mediated Interactions Chiu, Hua-Sheng 2014 Theses CarcinogenesisOncogenesBioinformaticsRNABiology--ClassificationGenetics
4. A classification-based framework for predicting and analyzing gene regulatory response Kundaje, Anshul; Middendorf, Manuel; Wiggins, Chris H.; Shah, Mihir; Freund, Yoav; Leslie, Christina 2006 Articles BioinformaticsGenetics
5. A Comparative Analysis of Genome Rearrangement in Ciliates Feng, Yi 2021 Theses BiologyBioinformaticsEvolution (Biology)Gene rearrangementCiliata--GeneticsEuplotesGenetic code
6. Adapting and Optimizing CBV-MRI and MEGAPRESS-MRS to Measure Slow Functional Changes in Normal and Abnormal Brains Guo, Jia 2018 Theses Biomedical engineeringNeurosciencesBioinformaticsBrain--Localization of functionsBrain--ImagingNeurochemistry
7. A haplotype inference algorithm for trios based on deterministic sampling Wang, Xiaodong; Anastassiou, Dimitris; Iliandis, Alexandros; Watkinson, John 2010 Articles GeneticsBioinformatics
8. A method to identify differential expression profiles of time-course gene data with Fourier transformation Kim, Jaehee; Ogden, Robert T.; Kim, Haseong 2013 Articles Gene expression--Data processingGenetics--Data processingFourier analysisBioinformaticsGene expressionGeneticsBiology
9. Analysis of Oncogenic Signal Transduction with Application to KRAS Signaling Pathways Broyde, Joshua 2018 Theses BioinformaticsBiometryMolecular biologyCancer--Molecular aspectsCellular signal transductionOncology
10. Analysis of trans eSNPs infers regulatory network architecture Kreimer, Anat 2014 Theses Bioinformatics
11. Analyzing Genomic Studies and a Screen for Genes that Suppress Information Loss During DNA Damage Repair Pierce, Steven 2013 Theses BiologyCytologyBioinformatics
12. A negative selection heuristic to predict new transcriptional targets Cerulo, Luigi; Paduano, Vincenzo; Zoppoli, Pietro; Ceccarelli, Michele 2013 Articles BioinformaticsComputer science
13. An event-related potential examination of contour integration deficits in schizophrenia Butler, Pamela D.; Abeles, Ilana Y.; Silverstein, Steven M.; Dias, Elisa C.; Weiskopf, Nicole Gray; Calderone, Daniel J.; Sehatpour, Pejman 2013 Articles PsychologyBioinformaticsPsychobiology
14. A New Approach to Spatial Covariance Modeling of Functional Brain Imaging Data: Ordinal Trend Analysis Habeck, Christian G.; Krakauer, John W.; Ghez De Castelnvovo, Claude; Sackeim, Harold A.; Eidelberg, David; Stern, Yaakov; Moeller, James R. 2005 Articles CognitionCognitive scienceCognition--MeasurementDiagnostic imagingBrain--ImagingNeurosciencesBioinformatics
15. An Integrative Review of the Literature on Technology Transformation in Healthcare Phillips, Andrew Bartlett 2012 Theses BioinformaticsMedical technologyMedical care--Technological innovationsPatient Protection and Affordable Care Act (United States)
16. A Novel Platform to Perform Cancer-Relevant Synthetic Dosage Lethality Screens in Saccharomyces cerevisiae Dittmar, John 2013 Theses BioinformaticsBiologyGenetics
17. A Novel Quantification Method for Determining Previously Undetected Silent Infarcts on MR-perfusion in Patients Following Carotid Endarterectomy Liu, Xin; Imielinska, Celina Z.; Rosiene, Joel; Rampersad, Anita; Wilson, David; Zurica, Joseph; Halazun, Hadi; Williams, Susan C.; Ligneli, Angela; D'Ambrosio, Anthony Louis; Sughrue, Michael; Connolly Jr., E. Sander; Heyer, Eric J. 2005 Conference Objects BioinformaticsDiagnostic imagingNeurosciences
18. APG: an Active Protein-Gene Network Model to Quantify Regulatory Signals in Complex Biological Systems Wang, Jiguang; Sun, Yidan; Zheng, Si; Zhang, Xiang-Sun; Zhou, Huarong; Chen, Luonan 2013 Articles BiometryBioinformatics
19. Application of Augmented Reality to Visualizing Anatomical Airways Imielinska, Celina Z.; Meyer, Catherine; Frolich, Seth; Ha, Yonggang; Daly, Jason; Lin, Kuo-Chi; Norfleet, Jack; Hamza-Lup, Felix G.; Martin, Glenn; Davis, Larry; Rolland, Jannick P. 2002 Conference Objects BioinformaticsDiagnostic imaging
20. ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context Margolin, Adam A.; Nemenman, Ilya; Basso, Katia; Wiggins, Chris H.; Stolovitzky, Gustavo Alejandro; Favera, Riccardo Dalla; Califano, Andrea 2006 Articles BioinformaticsCytology
21. A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2014 Articles Computational biologyGenomics--Data processingBioinformatics
22. A Single-Cell Immune Map of Normal and Cancerous Breast Reveals an Expansion of Phenotypic States Driven by the Tumor Microenvironment Carr, Ambrose James 2018 Theses BioinformaticsOncologyComputer scienceImmunologyTumors
23. Assessing the potential of a diabetes self-management technology intervention for underserved adults Heitkemper, Elizabeth Mary 2017 Theses NursingBioinformaticsMedical technologyPatient self-monitoringMedically underserved areasDiabetes--Treatment
24. Assessment and Documentation of Sexual Orientation and Gender Identity in Home Healthcare Bjarnadottir, Ragnhildur I. 2016 Theses Sexual orientationGender identityNurse and patientBioinformaticsHealth services administrationNursingPublic healthMedical care
25. A Systems-Level Approach to Understand The Seasonal Factors Of Early Development With Clinical and Pharmacological Applications Boland, Mary Regina 2017 Theses BioinformaticsMedical sciencesDiseases--Seasonal variationsAbnormalities, HumanDiseases--Causes and theories of causation
26. Attractor Metafeatures and Their Application in Biomolecular Data Analysis Ou Yang, Tai-Hsien 2018 Theses BioinformaticsElectrical engineeringAttractors (Mathematics)AlgorithmsBiochemical markers
27. Attractor Molecular Signatures and Their Applications for Prognostic Biomarkers Cheng, Wei-Yi 2013 Theses Electrical engineeringBioinformatics
28. BAMarray™: Java software for Bayesian analysis of variance for microarray data Ishwaran, Hemant; Rao, J. Sunil; Kogalur, Udaya B. 2006 Articles DNA microarrays--Data processingJava (Computer program language)BioinformaticsBayesian statistical decision theoryStatisticsInformation technology
29. Bayesian estimation of scaled mutation rate under the coalescent: a sequential Monte Carlo approach Ogundijo, Oyetunji Enoch; Wang, Xiaodong 2017 Articles BioinformaticsBayesian statistical decision theoryMonte Carlo methodGenealogyGenetics
30. Bayesian Multiple-Instance Motif Discovery with BAMBI: Inference of Recombinase and Transcription Factor Binding Sites Jajamovich, Guido H.; Wang, Xiaodong; Arkin, Adam P.; Samoilov, Michael S. 2011 Articles Bioinformatics
31. BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data Saal, Lao H.; Troein, Carl; Vallon-Christersson, Johan; Gruvberger, Sofia; Borg, Åke; Peterson, Carsten 2002 Articles BioinformaticsDNA microarraysCytologyGenetics
32. Biological Insights from Geometry and Structure of Single-Cell Data Sharma, Roshan 2019 Theses BioinformaticsMathematicsT cells--DifferentiationGeometrySingle cell proteins
33. BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features Tsai, Richard; Chou, Wen-Chi; Su, Ying-Shan; Lin, Yu-Chun; Sung, Cheng-Lung; Dai, Hong-Jie; Yeh, Irene; Ku, Wei; Sung, Ting-Yi; Hsu, Wen-Lian 2007 Articles Entropy (Information theory)--Mathematical modelsBiomedical engineering--ResearchBioinformaticsBiomedical engineering
34. Bos taurus genome assembly Liu, Yue; Qin, Xiang; Song, Xing-Zhi; Jiang, Huaiyang; Shen, Yufeng; Durbin, K James; Lien, Sigbjørn; Kent, Matthew; Sodeland, Marte; Ren, Yanru; Zhang, Lan; Sodergren, Erica; Havlak, Paul; Worley, Kim; Weinstock, George; Gibbs, Richard 2009 Articles BioinformaticsGenetics
35. Cartographic Analysis of Antennas and Towers: A Novel Approach to Improving the Implementation and Data Transmission of mHealth Tools on Mobile Networks Brown III, William; Ibitoye, Mobolaji Omowumi; Bakken, Suzanne R.; Schnall, Rebecca; Balán, Iván C.; Frasca, Timothy Joel; Carballo-Diéguez, Alex 2015 Articles Medical careBioinformaticsBiomedical engineeringWireless communication systems in medical careMedicine
36. Causal machine learning for reliable real-world evidence generation in healthcare Zhang, Linying 2023 Theses BioinformaticsMachine learning--Industrial applicationsMedical records--Data processingMedical care--StatisticsEquality--Health aspects
37. Cell Memory in the Mitogen-Activated Protein Kinase Signaling Pathway Lyashenko, Eugenia 2015 Theses Mitogen-activated protein kinasesWeber-Fechner lawCellular control mechanismsBioinformaticsBiology
38. Centroid based clustering of high throughput sequencing reads based on n-mer counts Solovyov, Alexander; Lipkin, W. Ian 2013 Articles Sequence alignment (Bioinformatics)BioinformaticsBioinformatics--MethodologyComputational biologyBiology
39. Chapter 1 : Hybrid Segmentation Methods Imielinska, Celina Z.; Jin, Yinpeng; Angelini, Elsa D.; Metaxas, Dimitris; Udupa, Jayaram K.; Chen, Ting; Zhuge, Ying 2004 Chapters (Layout Features) BioinformaticsBiomedical engineeringDiagnostic imaging
40. Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data Feng, Huijuan; Li, Tingting; Zhang, Xuegong 2018 Articles Prostate--CancerGene expressionRNA splicingProtein kinasesGenomicsBioinformatics
41. Characterizing environmental and phenotypic associations using information theory and electronic health records Friedman, Carol; Hripcsak, George M.; Wang, Xiaoyan 2009 Articles Bioinformatics
42. Characterizing Immune Responses to Marburg Virus Infection in Animal Hosts Using Statistical Transcriptomic Analysis Lee, Albert Kim 2018 Theses BioinformaticsMarburg virusHost-virus relationshipsVirus diseases--Immunological aspectsImmunology
43. Characterizing Immunoglobulin Repertoire from Whole Blood by a Personal Genome Sequencer Gao, Fan; Lin, Edwin; Feng, Yaping; Mack, William J.; Shen, Yufeng; Wang, Kai 2013 Articles ImmunoglobulinsNucleotide sequenceMeningiomaBlood--AnalysisBioinformaticsImmunology
44. Characterizing molecular drivers of clinical outcome in pediatric acute leukemias by systems biology and machine learning Alloy, Alexandre Paul 2021 Theses BioinformaticsLeukemia--Genetic aspectsLeukemia in childrenMachine learningAcute leukemia
45. ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding Margolin, Adam; Palomero Vazquez, M. Teresa; Ferrando, Adolfo A.; Califano, Andrea; Stolovitzky, Gustavo 2007 Articles BioinformaticsGene regulatory networksHuman genetics--VariationGeneticsBiology
46. Combining Heterogeneous Databases to Detect Adverse Drug Reactions Li, Ying 2015 Theses Bioinformatics
47. Common and rare genetic effects on the transcriptome and their contribution to human traits Einson, Jonah 2022 Theses BioinformaticsHuman genetics--VariationBiology--ClassificationHuman genomeGenetic regulation
48. Comparing Neural Correlates of Visual Target Detection in Serial Visual Presentations Having Different Temporal Correlations Luo, An; Sajda, Paul 2009 Articles Biomedical engineeringBioinformaticsNeurosciences
49. Comparing single-nucleotide polymorphism marker-based and microsatellite marker-based linkage analyses Ulgen, Ayse; Li, Wentian 2005 Articles Microsatellites (Genetics)Linkage (Genetics)Single nucleotide polymorphismsBioinformaticsGeneticsEpidemiology
50. Comparison of the power between microsatellite and single-nucleotide polymorphism markers for linkage and linkage disequilibrium mapping of an electrophysiological phenotype Lin, Hsiu-Fen; Juo, Suh-Hang; Cheng, Rong 2005 Articles Microsatellites (Genetics)Gene mappingGenetic polymorphismsGeneticsBioinformaticsEpidemiology