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3. Accurate and sensitive quantification of protein-DNA binding affinity

Rastogi, Chaitanya; Rube, Hans Tomas; Kribelbauer, Judith Franziska; Crocker, Justin; Loker, Ryan Edmund; Martini, Gabriella D.; Laptenko, Oleg; Freed-Pastor, William Allen; Prives, Carol L.; Stern, David L.; Mann, Richard S.; Bussemaker, Harmen J.
2018
Articles
Transcription factorsDNA-protein interactionsProtein bindingProbabilities--Mathematical models

9. An Economic Framework of Microbial Trade

Tasoff, Joshua; Wang, Harris H.; Mee, Michael T.
2015
Articles
Equilibrium (Economics)Microbial growthMicrobial metabolitesEscherichia coli--GrowthCell metabolismMicrobiologyCytologyBiology

16. Bacterial Adaptation through Loss of Function

Hottes, Alison K.; Freddolino, Peter L.; Khare, Anupama; Donnell, Zachary N.; Liu, Julia C.; Tavazoie, Saeed
2013
Articles
Microbial mutationNonsense mutationBacteriaGeneticsMicrobiologyBiology--Classification

23. De novo variants in congenital diaphragmatic hernia identify MYRF as a new syndrome and reveal genetic overlaps with other developmental disorders

Qi, Hongjian; Yu, Lan; Zhou, Xueya; Wynn, Julia; Zhao, Haoquan; Guo, Yicheng; Zhu, Na; Kitaygorodsky, Alexander; Hernan, Rebecca Rose; Aspelund, Gudrun; Lim, Foong-Yen; Crombleholme, Timothy; Cusick, Robert; Azarow, Kenneth; Danko, Melissa E.; Chung, Dai; Warner, Brad W.; Mychaliska, George B.; Potoka, Douglas; Wagner, Amy J.; ElFiky, Mahmoud; Wilson, Jay M.; Nickerson, Debbie; Bamshad, Michael; High, Frances A.; Longoni, Mauro; Donahoe, Patricia K.; Chung, Wendy K.; Shen, Yufeng
2018
Articles
Diaphragmatic herniaGenetic disordersMyelin genes--Expression

31. Genome Wide Analysis of Drug-Induced Torsades de Pointes: Lack of Common Variants with Large Effect Sizes

Behr, Elijah R.; Ritchie, Marylyn D.; Tanaka, Toshihiro; Kääb, Stefan; Crawford, Dana C.; Nicoletti, Paola; Floratos, Aristidis; Kannankeril, Prince J.; Sinner, Moritz F.; M. Wilde, Arthur A.; Bezzina, Connie R.; Schulze-Bahr, Eric; Zumhagen, Sven; Guicheney, Pascale; Bishopric, Nanette H.; Marshall, Vanessa; Shakir, Saad; Dalageorgou, Chrysoula; Jamshidi, Yalda; Bevan, Steve; Bastiaenen, Rachel; Myerburg, Robert J.; Schott, Jean-Jacques; Camm, A. John; Steinbeck, Gerhard; Norris, Kris; Altman, Russ B.; Tatonetti, Nicholas P.; Jeffery, Steve; Kubo, Michiaki; Nakamura, Yusuke; Shen, Yufeng; George Jr, Alfred L.; Roden, Dan M.
2013
Articles
Medical geneticsVentricular tachycardiaDrug interactionsGenomics

34. Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data

Fernandez-Cuesta, Lynnette; Sun, Ruping; Menon, Roopika; George, Julie; Lorenz, Susanne; Meza-Zepeda, Leonardo; Peifer, Martin; Plenker, Dennis; Heuckmann, Johannes; Leenders, Frauke; Zander, Thomas; Dahmen, Ilona; Koker, Mirjam; Schöttle, Jakob; Ullrich, Roland; Altmüller, Janine; Becker, Christian; Nürnberg, Peter; Seidel, Henrik; Böhm, Diana; Göke, Friederike; Ansén, Sascha; Russell, Prudence; Wright, Gavin; Wainer, Zoe; Solomon, Benjamin; Petersen, Iver; Clement, Joachim; Sänger, Jörg; Brustugun, Odd-Terje; Helland, Åslaug; Solberg, Steinar; Lund-Iversen, Marius; Buettner, Reinhard; Wolf, Jürgen; Brambilla, Elisabeth; Vingron, Martin; Perner, Sven; Haas, Stefan; Thomas, Roman
2015
Articles
GeneticsOncology

37. Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling

Bilal, Erhan; Dutkowski, Janusz; Guinney, Justin; Jang, In Sock; Logsdon, Benjamin A.; Mecham, Brigham H.; Pandey, Gaurav; Vollan, Hans Kristian Moen; Sauerwine, Benjamin A.; Shimoni, Yishai; Rueda, Oscar M.; Curtis, Christina; Tost, Jorg; Alvarez, Mariano Javier; Kristensen, Vessela N.; Aparicio, Samuel; Børresen-Dale, Anne-Lise; Califano, Andrea; Caldas, Carlos; Friend, Stephen H.; Ideker, Trey; Stolovitzky, Gustavo A.; Schadt, Eric E.; Margolin, Adam A.
2013
Articles
PrognosisMachine learningBreast--CancerMedicine

43. Loss of RNA expression and allele-specific expression associated with congenital heart disease

McKean, David M.; Homsy, Jason; Wakimoto, Hiroko; Patel, Neil; Ware, James S.; DePalma, Steven R.; Gorham, Joshua; Zaidi, Samir; Ma, Wenji; Patel, Nihir; Shen, Yufeng; Chung, Wendy K.; Lifton, Richard P.; Kim, Richard; Brueckner, Martina; Goldmuntz, Elizabeth; Sharp, Andrew J.; Seidman, Christine E.; Gelb, Bruce D.; Seidman, J. G.
2016
Articles
Gene expressionAbnormalities, HumanRNACongenital heart diseaseGenetics

48. MRI-localized biopsies reveal subtype-specific differences in molecular and cellular composition at the margins of glioblastoma

Gill, Brian J.; Pisapia, David J.; Malone, Hani R.; Goldstein, Hannah E.; Lei, Liang; Sonabend Worthalter, Adam Mendel; Yun, Jonathan; Samanamud, Jorge; Sims, Jennifer S.; Banu, Matei Alexandru; Dovas, Athanassios; Teich, Andrew F.; Sheth, Sameer A.; McKhann, Guy M.; Sisti, Michael B.; Bruce, Jeffrey N.; Sims, Peter A.; Canoll, Peter D.
2014
Articles
Nucleotide sequenceGliomasBiologyOncology

50. Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining

Shameer, Khader; Perez-Rodriguez, M. M.; Bachar, Roy; Li, Li; Johnson, Amy; Johnson, Kipp W.; Glicksberg, Benjamin S.; Smith, Milo R.; Readhead, Ben; Scarpa, Joseph; Jebakaran, Jebakumar; Kovatch, Patricia; Lim, Sabina; Goodman, Wayne; Reich, David L.; Kasarskis, Andrew; Tatonetti, Nicholas P.; Dudley, Joel T.
2018
Articles
PharmacologyBioinformaticsHospitals--Admission and discharge--Data processingPsychiatric hospital patientsHealth services administration--Data processingBig data