Academic Unit: Systems Biology / Subject: Genetics / Type: Articles | Search Results

1. Predicting genes for orphan metabolic activities using phylogenetic profiles

: Chen, Lifeng; Vitkup, Dennis
: 2006
: Articles
: Biological systems--Mathematical modelsPhylogenyMetabolism--RegulationBioinformaticsGeneticsMicrobiology

2. Model based analysis of real-time PCR data from DNA binding dye protocols

: Alvarez, Mariano Javier; Vila-Ortiz, Guillermo; Salibe, Mariano; Podhajcer, Osvaldo; Pitossi, Fernando
: 2007
: Articles
: Polymerase chain reactionMessenger RNABioinformaticsGenetics

3. Pattern-based mining strategy to detect multi-locus association and gene × environment interaction

: Li, Zhong; Zheng, Tian; Califano, Andrea; Floratos, Aristidis
: 2007
: Articles
: GeneticsBiometry

4. Correlating measurements across samples improves accuracy of large-scale expression profile experiments

: Alvarez, Mariano; Sumazin, Pavel; Rajbhandari, Presha; Califano, Andrea
: 2009
: Articles
: GeneticsBioinformatics

5. An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

: Fabbro, Cristian Del; Scalabrin, Simone; Morgante, Michele; Giorgi, Federico M.
: 2013
: Articles
: Genetic algorithms--Data processingAlgorithms--EvaluationNucleotide sequence--Data processingGenetics

6. Bacterial Adaptation through Loss of Function

: Hottes, Alison K.; Freddolino, Peter L.; Khare, Anupama; Donnell, Zachary N.; Liu, Julia C.; Tavazoie, Saeed
: 2013
: Articles
: Microbial mutationNonsense mutationBacteriaGeneticsMicrobiologyBiology--Classification

7. Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies

: Panousis, Nikolaos; Gutierrez-Arcelus, Maria; Dermitzakis, Emmanouil; Lappalainen, Tuuli E.
: 2014
: Articles
: Genetics

8. Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information

: Giorgi, Federico M.; Lopez, Gonzalo; Woo, Jung H.; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh
: 2014
: Articles
: Gene expressionGenetic algorithmsTranscription factorsBioinformaticsGeneticsMolecular biology

9. Mammalian E-type Cyclins Control Chromosome Pairing, Telomere Stability and CDK2 Localization in Male Meiosis

: Martinerie, Laetitia; Manterola, Marcia; Chung, Sanny S. W.; Panigrahi, Sunil Kumar; Geng, Yan; Weisbach, Melissa; Sicinski, Peter; Wolgemuth, Debra J.; Vasileva, Ana
: 2014
: Articles
: MeiosisInfertility, MaleCyclinsGenetics

10. ABC Transporters and the Proteasome Complex Are Implicated in Susceptibility to Stevens–Johnson Syndrome and Toxic Epidermal Necrolysis across Multiple Drugs

: Nicoletti, Paola; Bansal, Mukesh; Lefebvre, Celine; Guarnieri, Paolo; Shen, Yufeng; Pe’er, Itsik; Califano, Andrea; Floratos, Aristidis
: 2015
: Articles
: Drugs--Side effectsATP-binding cassette transportersGene expressionGenetic regulationApoptosisToxic epidermal necrolysisBiology--ClassificationBioinformaticsGenetics

11. Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data

: Fernandez-Cuesta, Lynnette; Sun, Ruping; Menon, Roopika; George, Julie; Lorenz, Susanne; Meza-Zepeda, Leonardo; Peifer, Martin; Plenker, Dennis; Heuckmann, Johannes; Leenders, Frauke; Zander, Thomas; Dahmen, Ilona; Koker, Mirjam; Schöttle, Jakob; Ullrich, Roland; Altmüller, Janine; Becker, Christian; Nürnberg, Peter; Seidel, Henrik; Böhm, Diana; Göke, Friederike; Ansén, Sascha; Russell, Prudence; Wright, Gavin; Wainer, Zoe; Solomon, Benjamin; Petersen, Iver; Clement, Joachim; Sänger, Jörg; Brustugun, Odd-Terje; Helland, Åslaug; Solberg, Steinar; Lund-Iversen, Marius; Buettner, Reinhard; Wolf, Jürgen; Brambilla, Elisabeth; Vingron, Martin; Perner, Sven; Haas, Stefan; Thomas, Roman
: 2015
: Articles
: GeneticsOncology

12. Pharmacologic inhibition of JAK-STAT signaling promotes hair growth

: Harel, Sivan; Higgins, Claire A.; Cerise, Jane Elizabeth; Dai, Zhenpeng; Chen, James C.; Clynes, Raphael A.; Christiano, Angela M.
: 2015
: Articles
: JAK-STAT pathwayHair growth stimulantsPharmacologyBaldnessGeneticsMolecular biology

13. RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states

: Jiang, Kaiyu; Sun, Xiaoyun; Chen, Yanmin; Shen, Yufeng; Jarvis, James N.
: 2015
: Articles
: Biochemical markersRheumatismGenetic transcriptionGenetics

14. SeqMule: automated pipeline for analysis of human exome/genome sequencing data

: Guo, Yunfei; Ding, Xiaolei; Shen, Yufeng; Lyon, Gholson J.; Wang, Kai
: 2015
: Articles
: Genomes--Data processingGeneticsSoftware engineeringBioinformaticsSystems biology

15. A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions

: Stockman, Victoria B.; Ghamsari, Lila; Lasso Cabrera, Gorka; Honig, Barry; Shapira, Sagi; Wang, Harris H.
: 2016
: Articles
: RNAMammals--Molecular geneticsNucleotide sequenceSystems biologyMolecular geneticsCloningGeneticsBiology--Classification

16. Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants

: Elmas, Abdulkadir; Ou Yang, Tai-Hsien; Wang, Xiaodong; Anastassiou, Dimitris
: 2016
: Articles
: Genomics--Data processingHuman genetics--Data processingChromosomesGene mappingSingle nucleotide polymorphismsGeneticsBiology--Classification

17. Interpreting the Dependence of Mutation Rates on Age and Time

: Gao, Ziyue; Wyman, Minyoung J.; Sella, Guy; Przeworski, Molly F.
: 2016
: Articles
: DNA replicationCell divisionCells--Growth--Mathematical modelsDNA repairMutation (Biology)GeneticsBiologyCytology

18. Loss of RNA expression and allele-specific expression associated with congenital heart disease

: McKean, David M.; Homsy, Jason; Wakimoto, Hiroko; Patel, Neil; Ware, James S.; DePalma, Steven R.; Gorham, Joshua; Zaidi, Samir; Ma, Wenji; Patel, Nihir; Shen, Yufeng; Chung, Wendy K.; Lifton, Richard P.; Kim, Richard; Brueckner, Martina; Goldmuntz, Elizabeth; Sharp, Andrew J.; Seidman, Christine E.; Gelb, Bruce D.; Seidman, J. G.
: 2016
: Articles
: Gene expressionAbnormalities, HumanRNACongenital heart diseaseGenetics

19. The Role of Genome Accessibility in Transcription Factor Binding in Bacteria

: Gomes, Antonio L.; Wang, Harris H.
: 2016
: Articles
: Genetic regulationBacterial geneticsTranscription factorsMolecular biologyPathologyGenetics

20. Identifying genetic variants that affect viability in large cohorts

: Mostafavi, Hakhamanesh; Berisa, Tomaz; Day, Felix R.; Perry, John R. B.; Przeworski, Molly F.; Pickrell, Joseph K.
: 2017
: Articles
: GeneticsEvolutionary geneticsViability (Biology)Genetic epidemiology

21. The time and place of European admixture in Ashkenazi Jewish history

: Xue, James; Lencz, Todd; Darvasi, Ariel; Pe'er, Itsik; Carmi, Shai
: 2017
: Articles
: Gene flowGeneticsPopulation geneticsAshkenazimHistorical geography

22. Rare variants in SOX17 are associated with pulmonary arterial hypertension with congenital heart disease

: Zhu, Na; Welch, Carrie L.; Wang, Jiayao; Allen, Philip M.; Gonzaga-Jauregui, Claudia; Ma, Lijiang; King, Alejandra K.; Krishnan, Usha; Rosenzweig, Erika B.; Ivy, D. Dunbar; Austin, Eric D.; Hamid, Rizwan; Pauciulo, Michael W.; Lutz, Katie A.; Nichols, William C.; Reid, Jeffrey G.; Overton, John D.; Baras, Aris; Dewey, Frederick E.; Shen, Yufeng; Chung, Wendy K.
: 2018
: Articles
: Pulmonary hypertensionCongenital heart diseaseExomesGeneticsGenomics

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