1. Meta-analysis of expression and methylation signatures indicates a stress-related epigenetic mechanism in multiple neuropsychiatric disorders Zhu, Kaiyi; Ou Yang, Tai-Hsien; Dorie, Vincent Joseph; Zheng, Tian; Anastassiou, Dimitris 2019 Articles Neurobehavioral disordersPathologyEpigeneticsMethylationStress (Psychology)--Physiological aspectsSystems biology
2. Analysis of genotype by methylation interactions through sparsity-inducing regularized regression Zhou, Wenda; Lo, Shaw-Hwa 2018 Articles Quantitative researchDNA--MethylationGenetics
3. Bayesian hierarchical vector autoregressive models for patient-level predictive modeling Lu, Feihan; Zheng, Yao; Cleveland, Harrington; Burton, Chris; Madigan, David B. 2018 Articles Preventive health servicesBayesian statistical decision theory--Mathematical modelsAutoregression (Statistics)Medical care
4. Bifurcation analysis of two coupled Jansen-Rit neural mass models Ahmadizadeh, Saeed; Karoly, Philippa J.; Nešić, Dragan; Grayden, David B.; Cook, Mark J.; Soudry, Daniel; Freestone, Dean R. 2018 Articles Bifurcation theoryNeurologyNeural circuitryEpilepsy--PathophysiologyNeural networks (Neurobiology)Statistics
5. Causal modeling in a multi-omic setting: insights from GAW20 Auerbach, Jonathan; Howey, Richard; Jiang, Lai; Justice, Anne; Li, Liming; Oualkacha, Karim; Sayols-Baixeras, Sergi; Aslibekyan, Stella W. 2018 Articles GenomicsLipidsDiseasesStatistics
6. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data Berens, Philipp; Freeman, Jeremy; Deneux, Thomas; Chenkov, Nikolay; McColgan, Thomas; Speiser, Artur; Macke, Jakob H.; Turaga, Srinivas C.; Mineault, Patrick; Rupprecht, Peter; Gerhard, Stephan; Friedrich, Rainer W.; Friedrich, Johannes; Paninski, Liam; Pachitariu, Marius; Harris, Kenneth; Bolte, Ben; Machado, Timothy Aloysius; Ringach, Dario; Stone, Jasmine; Rogerson, Luke E.; Sofroniew, Nicolas J.; Reimer, Jacob; Froudarakis, Emmanouil; Euler, Thomas; Roson, Miroslav Roman; Theis, Lucas; Tolias, Andreas S.; Bethge, Matthias 2018 Articles Computational biologyAlgorithmsNeurosciencesComputer science
7. Coping with family structure in genome-wide association studies: a comparative evaluation Hsu, Yayun; Auerbach, Jonathan; Zheng, Tian; Lo, Shaw-hwa 2018 Articles FamiliesQuantitative research
8. Different population dynamics in the supplementary motor area and motor cortex during reaching Lara, Antonio Homero; Cunningham, James P.; Churchland, Mark M. 2018 Articles Motor cortexMemory--Physiological aspectsBrain--PhysiologyVisual perception--Data processingSensory stimulationNeurology
9. Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data Zhou, Pengcheng; Resendez, Shanna L.; Rodriguez-Romaguera, Jose; Jimenez, Jessica; Neufeld, Shay Q.; Giovannucci, Andrea; Friedrich, Johannes; Pnevmatikakis, Eftychios; Stuber, Garret D.; Hen, Rene; Kheirbek, Mazen A.; Sabatini, Bernardo L.; Kass, Robert E.; Paninski, Liam 2018 Articles NeurosciencesNeuronsBiometryEndoscopyStatistics
10. Neyman-Pearson classification algorithms and NP receiver operating characteristics Tong, Xin; Feng, Yang; Li, Jingyi Jessica 2018 Articles StatisticsScience--Data processingClassificationAlgorithms
11. Readmission prediction via deep contextual embedding of clinical concepts Xiao, Cao; Ma, Tengfei; Dieng, Adji Bousso; Blei, David Meir; Wang, Fei 2018 Articles Computer scienceHospital utilization--ForecastingHospital recordsNeural networks (Computer science)
12. The challenge of detecting genotype-by-methylation interaction: GAW20 de Andrade, Mariza; Warwick Daw, E.; Kraja, Aldi T.; Fisher, Virginia; Wang, Lan; Hu, Ke; Li, Jing; Romanescu, Razvan; Veenstra, Jenna; Sun, Rui; Weng, Haoyi; Zhou, Wenda 2018 Articles DNA--MethylationGeneticsGenotype-environment interaction
13. A continuous morphological approach to study the evolution of pollen in a phylogenetic context: An example with the order Myrtales Kriebel, Ricardo; Khabbazian, Mohammad Hassan; Sytsma, Kenneth J. 2017 Articles PhylogenyPollen--MorphologyMyrtalesBotanyStatistics
14. Body size and hosts of Triatoma infestans populations affect the size of bloodmeal contents and female fecundity in rural northwestern Argentina Gürtler, Ricardo E.; del Pilar Fernández, María; Cecere, María C.; Cohen, Joel E. 2017 Articles TriatomaFertilityStatisticsEcology
15. Electrical stimulus artifact cancellation and neural spike detection on large multi-electrode arrays Mena, Gonzalo Esteban; Grosberg, Lauren; Madugula, Sasidhar; Hottowy, Paweł; Litke, Alan; Cunningham, John Patrick; Chichilnisky, E. J.; Paninski, Liam 2017 Articles Computational biologyNeural stimulationStatistics
16. Fast online deconvolution of calcium imaging data Friedrich, Johannes; Zhou, Pengcheng; Paninski, Liam 2017 Articles CalciumAlgorithmsOptimizing compilersChemistry
17. Multi-scale approaches for high-speed imaging and analysis of large neural populations Friedrich, Johannes; Yang, Weijian; Soudry, Daniel; Mu, Yu; Ahrens, Misha B.; Yuste, Rafael; Peterka, Darcy S.; Paninski, Liam 2017 Articles Brain--ImagingNeurosciencesNeuronsComputational biology
18. The Prior Can Often Only Be Understood in the Context of the Likelihood Gelman, Andrew E.; Simpson, Daniel; Betancourt, Michael Joseph 2017 Articles Bayesian statistical decision theoryDistribution (Probability theory)Statistics
19. Machine learning and data mining in complex genomic data a review on the lessons learned in Genetic Analysis Workshop Nineteen Konig, Inke R.; Auerbach, Jonathan Lyle; Gola, Damian; Held, Elizabeth; Holzinger, Emily R.; Legault, Marc Andre; Sun, Rui; Tintle, Nathan; Yang, Hsin Chou 2016 Articles Machine learningData miningGenomics
20. Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1 Seely, Jeffrey Scott; Kaufman, Matthew T.; Ryu, Stephen I.; Shenoy, Krishna V.; Cunningham, John Patrick; Churchland, Mark M. 2016 Articles Motor cortexCalculus of tensorsNeuronsVisual cortexNeurosciencesBiometry