1. Computational Analysis of Biomolecular Data for Medical Applications from Bulk to Single-cell Zhu, Kaiyi 2020 Theses Electrical engineeringBioinformaticsNucleotide sequenceDNARNABiomolecules--AnalysisMolecular diagnosis
2. Attractor Metafeatures and Their Application in Biomolecular Data Analysis Ou Yang, Tai-Hsien 2018 Theses BioinformaticsElectrical engineeringAttractors (Mathematics)AlgorithmsBiochemical markers
3. Bayesian estimation of scaled mutation rate under the coalescent: a sequential Monte Carlo approach Ogundijo, Oyetunji Enoch; Wang, Xiaodong 2017 Articles BioinformaticsBayesian statistical decision theoryMonte Carlo methodGenealogyGenetics
4. Topics in Signal Processing: applications in genomics and genetics Elmas, Abdulkadir 2016 Theses Signal processingSignal processing--Statistical methodsGenetics--Data processingGenomics--Data processingBioinformaticsTranscription factorsElectrical engineering
5. Reconstruction of novel transcription factor regulons through inference of their binding sites Elmas, Abdulkadir; Wang, Xiaodong; Samoilov, Michael S. 2015 Articles Comparative genomicsBioinformaticsGenomics--Data processingComputational biologyTranscription factorsElectrical engineeringGeneticsMolecular biologyMathematics
6. A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2014 Articles Computational biologyGenomics--Data processingBioinformatics
7. Regularized EM algorithm for sparse parameter estimation in nonlinear dynamic systems with application to gene regulatory network inference Jia, Bin; Wang, Xiaodong 2014 Articles Gene regulatory networksExpectation-maximization algorithmsBioinformatics
8. Attractor Molecular Signatures and Their Applications for Prognostic Biomarkers Cheng, Wei-Yi 2013 Theses Electrical engineeringBioinformatics
9. Extracting Three-Dimensional Orientation and Tractography of Myofibers Using Optical Coherence Tomography Gan, Yu; Fleming, Christine P. 2013 Articles CytologyDiagnostic imagingBioinformatics
10. Gene regulatory network inference by point-based Gaussian approximation filters incorporating the prior information Jia, Bin; Wang, Xiaodong 2013 Articles Gaussian distributionIterative methods (Mathematics)Kalman filteringGene regulatory networksBioinformaticsBiometryMathematics
11. Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA Jajamovich, Guido H.; Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2013 Articles BiometryDNA--Data processingGenetics—ResearchBioinformaticsGeneticsBiology
12. Maximum parsimony xor haplotyping by sparse dictionary selection Elmas, Abdulkadir; Jajamovich, Guido H.; Wang, Xiaodong 2013 Articles Biometry--ResearchBioinformatics--MethodologyGenomics--Data processingGenetics—ResearchGeneticsBioinformaticsMolecular biology
13. Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2012 Articles GeneticsBioinformatics
14. Genome-wide Predictive Simulation on the Effect of Perturbation and the Cause of Phenotypic variations with Network Biology Approach Jang, In Sock 2012 Theses Electrical engineeringBioinformatics
15. Inference of gene regulatory networks from genome-wide knockout fitness data Wang, Liming; Wang, Xiaodong; Arkin, Adam P.; Samoilov, Michael S. 2012 Articles Bioinformatics
16. Topics in Genomic Signal Processing Jajamovich, Guido Hugo 2012 Theses Electrical engineeringBioinformatics
17. Bayesian Multiple-Instance Motif Discovery with BAMBI: Inference of Recombinase and Transcription Factor Binding Sites Jajamovich, Guido H.; Wang, Xiaodong; Arkin, Adam P.; Samoilov, Michael S. 2011 Articles Bioinformatics
18. Protein Secondary Structure Prediction using Deterministic Sequential Sampling Liang, Kuo-ching; Wang, Xiaodong 2011 Articles Bioinformatics
19. A haplotype inference algorithm for trios based on deterministic sampling Wang, Xiaodong; Anastassiou, Dimitris; Iliandis, Alexandros; Watkinson, John 2010 Articles GeneticsBioinformatics
20. Variable window binding for mutually exclusive alternative splicing Anastassiou, Dimitris; Liu, Hairuo; Varadan, Vinay 2006 Articles RNA splicingLocus of controlExons (Genetics)Messenger RNAGeneticsBioinformatics
21. Gene Prediction Using Multinomial Probit Regression with Bayesian Gene Selection Zhou, Xiaobo; Wang, Xiaodong; Dougherty, Edward R 2004 Articles GeneticsBioinformatics