1. Variable window binding for mutually exclusive alternative splicing Anastassiou, Dimitris; Liu, Hairuo; Varadan, Vinay 2006 Articles RNA splicingLocus of controlExons (Genetics)Messenger RNAGeneticsBioinformatics
2. Regularized EM algorithm for sparse parameter estimation in nonlinear dynamic systems with application to gene regulatory network inference Jia, Bin; Wang, Xiaodong 2014 Articles Gene regulatory networksExpectation-maximization algorithmsBioinformatics
3. Reconstruction of novel transcription factor regulons through inference of their binding sites Elmas, Abdulkadir; Wang, Xiaodong; Samoilov, Michael S. 2015 Articles Comparative genomicsBioinformaticsGenomics--Data processingComputational biologyTranscription factorsElectrical engineeringGeneticsMolecular biologyMathematics
4. Protein Secondary Structure Prediction using Deterministic Sequential Sampling Liang, Kuo-ching; Wang, Xiaodong 2011 Articles Bioinformatics
5. Maximum parsimony xor haplotyping by sparse dictionary selection Elmas, Abdulkadir; Jajamovich, Guido H.; Wang, Xiaodong 2013 Articles Biometry--ResearchBioinformatics--MethodologyGenomics--Data processingGenetics—ResearchGeneticsBioinformaticsMolecular biology
6. Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA Jajamovich, Guido H.; Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2013 Articles BiometryDNA--Data processingGenetics—ResearchBioinformaticsGeneticsBiology
7. Inference of gene regulatory networks from genome-wide knockout fitness data Wang, Liming; Wang, Xiaodong; Arkin, Adam P.; Samoilov, Michael S. 2012 Articles Bioinformatics
8. Gene regulatory network inference by point-based Gaussian approximation filters incorporating the prior information Jia, Bin; Wang, Xiaodong 2013 Articles Gaussian distributionIterative methods (Mathematics)Kalman filteringGene regulatory networksBioinformaticsBiometryMathematics
9. Gene Prediction Using Multinomial Probit Regression with Bayesian Gene Selection Zhou, Xiaobo; Wang, Xiaodong; Dougherty, Edward R 2004 Articles GeneticsBioinformatics
10. Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2012 Articles GeneticsBioinformatics
11. Extracting Three-Dimensional Orientation and Tractography of Myofibers Using Optical Coherence Tomography Gan, Yu; Fleming, Christine P. 2013 Articles CytologyDiagnostic imagingBioinformatics
12. Bayesian Multiple-Instance Motif Discovery with BAMBI: Inference of Recombinase and Transcription Factor Binding Sites Jajamovich, Guido H.; Wang, Xiaodong; Arkin, Adam P.; Samoilov, Michael S. 2011 Articles Bioinformatics
13. Bayesian estimation of scaled mutation rate under the coalescent: a sequential Monte Carlo approach Ogundijo, Oyetunji Enoch; Wang, Xiaodong 2017 Articles BioinformaticsBayesian statistical decision theoryMonte Carlo methodGenealogyGenetics
14. A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2014 Articles Computational biologyGenomics--Data processingBioinformatics
15. A haplotype inference algorithm for trios based on deterministic sampling Wang, Xiaodong; Anastassiou, Dimitris; Iliandis, Alexandros; Watkinson, John 2010 Articles GeneticsBioinformatics