1. Vitamin D resistance in chronic kidney disease (CKD) Parikh, Amay; Chase Jr, Herbert; Vernocchi, Linda; Stern, Leonard 2014 Articles CholecalciferolKidneys--Diseases--TreatmentMedicine
2. Viral diversity and clonal evolution from unphased genomic data Khiabanian, Hossein; Carpenter, Zachary; Kugelman, Jeffrey; Chan, Joseph; Trifonov, Vladimir; Nagle, Elyse; Warren, Travis; Iversen, Patrick; Bavari, Sina; Palacios, Gustavo; Rabadan, Raul 2014 Articles GenomicsCytologyBioinformatics
3. Using Rich Data on Comorbiditiesin Case-Control Study Design with Electronic Health Record Data Improves Control of Confounding in the Detection of Adverse Drug Reactions Backenroth, Daniel; Chase Jr., Herbert; Friedman, Carol; Wei, Ying 2016 Articles Drugs--Side effectsVariables (Mathematics)Case-control methodBiometry
4. Using Real-World Data to Enhance Clinical Trials Rogers, James Richard 2022 Theses Medical sciencesInformation technologyEpidemiologyClinical trials
5. Using heterogeneous, longitudinal EHR data for risk assessment and early detection of cardiovascular disease Bhave, Shreyas Abhay 2024 Theses BioinformaticsCardiovascular system--Diseases--DiagnosisCardiovascular system--Diseases--Risk factorsMedical records
6. Using EHRs to integrate research with patient care: promises and challenges Weng, Chunhua; Appelbaum, Paul S.; Hripcsak, George M.; Kronish, Ian M.; Busacca, Linda V.; Davidson, Karina W.; Bigger, John T. 2012 Articles Knowledge acquisition (Expert systems)Clinical medicine--ResearchMedical records--Data processingMedicineBioinformaticsInformation technology
7. Using contextual and lexical features to restructure and validate the classification of biomedical concepts Fan, Jung-Wei; Xu, Hua; Friedman, Carol 2007 Articles Biology--SemioticsUMLSBioinformaticsBiomedical engineering
8. Use of informatics methods to identify problems and then design, develop and evaluate solutions to support health workers in their management of malaria... Carlo Unda, Maria Lorena 2016 Theses Malaria--TreatmentBioinformaticsMillennium Villages (Project)User-centered system designHealth services administrationMalaria--PreventionInformation technologyComputer scienceMedical care
9. Understanding the Origins of a Pandemic Virus Hernandez, Carlos Xavier; Chan, Joseph M.; Khiabanian, Hossein; Rabadan, Raul 2011 Articles Public healthBioinformatics
11. Tumor-associated T cell receptor repertoires in low- and high-grade gliomas Sims, Jennifer S.; Grinshpun, Boris; Amendolara, Benjamin; Shen, Yufeng; Canoll, Peter D.; Sims, Peter A.; Bruce, Jeffrey N. 2013 Presentations (Communicative Events) AstrocytomasGliomasT cells--ReceptorsExcision (Surgery)Cancer--SurgeryGlioblastoma multiformeOncologySurgeryMedicine
12. Transition Networks in a Cohort of Patients with Congestive Heart Failure: A novel application of informatics methods to inform care coordination Merrill, Jacqueline A.; Sheehan, B. M.; Carley, K. M.; Stetson, P. D. 2015 Articles Health services administrationHospital careSystem analysisCongestive heart failureMedical careSystem theory
13. Transcriptome reconstruction and annotation of cynomolgus and African green monkey Lee, Albert Kim; Khiabanian, Hossein; Kugelman, Jeffrey; Elliott, Oliver T.; Nagle, Elyse; Yu, Guo-Yun; Warren, Travis; Palacios, Gustavo; Rabadan, Raul 2014 Articles BioinformaticsGenetics
14. Towards unified medical evidence computation from literature for evidence-based medicine Kang, Tian 2021 Theses BioinformaticsMedical care--Mathematical modelsMedicine
15. Toward standardized, comparable public health systems data: a taxonomic description of essential public health work Merrill, Jacqueline A.; Keeling, Jonathan; Gebbie, Kristine 2009 Articles Health services administrationMedical careSystem theoryPublic health
16. Toward Objective Quantification of Perfusion-weighted Computed Tomography in Subarachnoid Hemorrhage: Quantification of Symmetry and Automated Delineation of Vascular Territories Imielinska, Celina Z.; Liu, Sheena Xin; Rosiene, Joel; Sughrue, Michael E.; Mocco, J.; Komotar, Ricardo J.; Ransom, Evan R.; Lignelli-Dipple, Angela; Zacharia, Brad E.; Connolly, Edward S.; D'Ambrosio, Anthony Louis 2005 Articles Diagnostic imaging
17. Toward a Generalized Model of Biomedical Query Mediation to Improve Electronic Health Record Data Retrieval Hruby, Gregory William 2016 Theses Medical recordsBioinformaticsMedical electronicsMedical records--Data processingInformation science
18. The Transparent, Concurrent, and Collaborative Health Record: Methods to Improve Patients' Comprehension of Health Information Liu, Lisa Grossman 2021 Theses Information technologyMedicineHealth--Information servicesHealth--Information resourcesMachine learningPhysician and patient
19. The Influence of Management and Environment on Local Health Department Organizational Structure and Adaptation: A Longitudinal Network Analysis Keeling, Jonathan; Pryde, Julie A.; Merrill, Jacqueline A. 2013 Articles Health services administrationMedical careSystem theoryPublic health
20. Ten Simple Rules to Enable Multi-site Collaborations through Data Sharing Boland, Mary Regina; Karczewsk, Konrad J.; Tatonetti, Nicholas P. 2017 Articles Reproducible researchGroupware (Computer software)Open source softwareComputer software--Development
21. Systems biology approaches to precision medicine He, Jing 2017 Theses BioinformaticsCytologyComputer scienceSystems biologyMedicine
22. Systematic, network-based characterization of therapeutic target inhibitors Shen, Yao; Alvarez, Mariano; Bisikirska, Brygida; Lachmann, Alexander; Realubit, Ronald B.; Pampou, Sergey Yu; Coku, Jorida; Karan Jr., Charles; Califano, Andrea 2017 Articles TherapeuticsGene expressionComputational biologyBioinformatics
23. Symmetry Based Multi-modality Registration of the Brain Imagery Liu, Xin; Imielinska, Celina Z.; Laine, Andrew F.; D'Ambrosio, Anthony Louis 2007 Conference Objects Diagnostic imagingBioinformaticsNeurosciences
24. Study protocol: a cluster randomized controlled trial of web-based decision support tools for increasing BRCA1/2 genetic counseling referral in primary care Silverman, Thomas B.; Vanegas, Alejandro; Marte, Awilda; Mata, Jennie; Sin, Margaret; Ramirez, Juan C. R.; Tsai, Wei-Yann; Crew, Katherine; Kukafka, Rita 2018 Articles Breast--Cancer--PreventionDecision support systemsGenetic counselorsMedical care--Decision making
25. Structure-Function Relationships in the Human Visual System Using DTI, fMRI and Visual Field Testing: Pre- and Post-Operative Assessments in Patients with Anterior Visual Pathway Compression Rosiene, J.; Liu, Xin; D'Ambrosio, Anthony Louis; Hirsch, Joy; Bruce, Jeffrey N.; Ferrera, J.; Imielinska, Celina Z. 2006 Reports BioinformaticsDiagnostic imagingNeurosciences
26. STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud Karczewski, Konrad J.; Fernald, Guy Haskin; Martin, Alicia R.; Snyder, Michael; Tatonetti, Nicholas P.; Dudley, Joel T. 2014 Articles Open source softwareGenomics--Statistical methodsCloud computingGenetics
27. Simulating drug responses in laboratory test time series with deep generative modeling Yahi, Alexandre 2019 Theses BioinformaticsPharmacologyDecision support systemsMachine learningNeural networks (Computer science)
28. Signs of the 2009 Influenza Pandemic in the New York-Presbyterian Hospital Electronic Health Records Khiabanian, Hossein; Holmes, Antony B.; Kelly, Brendan J.; Gururaj, Mrinalini; Hripcsak, George M.; Rabadan, Raul 2010 Articles MedicineStatisticsPublic health
29. Semi-automated Color Segmentation of Anatomical Tissue Imielinska, Celina Z.; Downes, M. S.; Yuan, W. 2000 Articles Diagnostic imagingBioinformaticsComputer science
30. Semantic Relations in a Medical Digital Library Wacholder, Nina; Imielinska, Celina Z.; Soliz, Ewa; Klavans, Judith L.; Molholt, Pat 1998 Conference Objects Library scienceCommunication of technical informationMedical sciences
31. SAVI: a statistical algorithm for variant frequency identification Trifonov, Vladimir; Pasqualucci, Laura; Tiacci, Enrico; Falini, Brunangelo; Rabadan, Raul 2013 Articles Bayesian statistical decision theorySequence alignment (Bioinformatics)Gene frequency--Statistical methodsGeneticsBioinformaticsBiometry
32. Replicating Cardiovascular Condition-Birth Month Associations Li, Li; Boland, Mary Regina; Miotto, Riccardo; Tatonetti, Nicholas P.; Dudley, Joel T. 2016 Articles Cardiovascular system--Diseases--Risk factorsEpidemiologyMedical informaticsEnvironmental health
33. Redundancy in electronic health record corpora: analysis, impact on text mining performance and mitigation strategies Cohen, Raphael; Elhadad, Michael; Elhadad, Noemie 2013 Articles BioinformaticsComputer science
34. Redundancy-Aware Topic Modeling for Patient Record Notes Cohen, Raphael; Aviram, Iddo; Elhadad, Michael; Elhadad, Noemie 2014 Articles BioinformaticsMedical records--Data processingData miningMedical records
35. Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico Zhang, Xinyuan; Basile, Anna O.; Pendergrass, Sarah A.; Ritchie, Marylyn D. 2019 Articles Genetics—ResearchAnalysis of varianceSimulation methods
36. Real-Time Predictions of Reservoir Size and Rebound Time during Antiretroviral Therapy Interruption Trials for HIV Hill, Alison L.; Rosenbloom, Daniel; Goldstein, Edward; Hanhauser, Emily; Kuritzkes, Daniel R.; Siliciano, Robert F.; Henrich, Timothy J. 2016 Articles Viruses--ReproductionHIV infections--TreatmentHighly active antiretroviral therapyBioinformaticsVirologyPublic health
37. Ray Casting Approach for Boundary Extraction and Fourier Shape Descriptor Characterization Rosiene, Joel; Liu, Xin; Imielinska, Celina Z. 2005 Conference Objects Computer scienceBioinformaticsDiagnostic imaging
38. Rare variants in SOX17 are associated with pulmonary arterial hypertension with congenital heart disease Zhu, Na; Welch, Carrie L.; Wang, Jiayao; Allen, Philip M.; Gonzaga-Jauregui, Claudia; Ma, Lijiang; King, Alejandra K.; Krishnan, Usha; Rosenzweig, Erika B.; Ivy, D. Dunbar; Austin, Eric D.; Hamid, Rizwan; Pauciulo, Michael W.; Lutz, Katie A.; Nichols, William C.; Reid, Jeffrey G.; Overton, John D.; Baras, Aris; Dewey, Frederick E.; Shen, Yufeng; Chung, Wendy K. 2018 Articles Pulmonary hypertensionCongenital heart diseaseExomesGeneticsGenomics
39. Quantifying Pathogen Surveillance Using Temporal Genomic Data Chan, Joseph Minhow; Rabadan, Raul 2013 Articles BioinformaticsMolecular biologyCommunicable diseasesGenetics
40. Quantification of Diffusion-weighted Images (DWI) and Apparent Diffusion Coefficient Maps (ADC) in the Detection of Acute Stroke Tulipano, Paola K.; Millar, William S.; Imielinska, Celina Z.; Liu, Xin; Rosiene, Joel; D'Ambrosio, Anthony Louis 2006 Conference Objects BioinformaticsDiagnostic imagingBiomedical engineering
41. Properties of cell death models calibrated and compared using Bayesian approaches Eydgahi, Hoda; Chen, William W.; Muhlich, Jeremy L.; Vitkup, Dennis; Tsitsiklis, John N.; Sorger, Peter K. 2013 Articles BioinformaticsBiology--Classification
42. Project Gel a Randomized Rectal Microbicide Safety and Acceptability Study in Young Men and Transgender Women McGowan, Ian; Cranston, Ross D.; Mayer, Kenneth H.; Febo, Irma; Duffill, Kathryn; Siegel, Aaron; Engstrom, Jarret C.; Nikiforov, Alexyi; Park, Seo-Young; Brand, Rhonda M.; Jacobson, Cindy; Giguere, Rebecca; Dolezal, Curtis L.; Frasca, Timothy Joel; Leu, Cheng Shiun; Schwartz, Jill L.; Carballo-Dieguez, Alex 2016 Articles HIV infections—PreventionTransgender peopleGay men--Sexual behaviorPublic healthMedical sciences
43. Prevalence of potentially harmful multidrug interactions on medication lists of elderly ambulatory patients Anand, Tara Vafai; Wallace, Brendan Kiely; Chase Jr., Herbert 2021 Articles Drug interactionsDrugs--Side effectsPolypharmacyOlder peopleGeriatrics
44. Presence of early CKD-related metabolic complications predict progression of stage 3 CKD: a case-controlled study Chase, Herbert; Hirsch, Jamie; Mohan, Sumit; Rao, Maya K.; Radhakrishnan, Jai 2014 Articles MedicineBioinformatics
45. Post-transcriptional gene expression regulation in developmental disorders Kitaygorodsky, Alexander 2021 Theses BioinformaticsGeneticsComputer scienceGene expressionGenomesNeural networks (Neurobiology)
46. Population Physiology: Leveraging Electronic Health Record Data to Understand Human Endocrine Dynamics Albers, David J.; Hripcsak, George M.; Schmidt, J. Michael 2012 Articles StatisticsMedicine
47. Pilot study of decision support tools on breast cancer chemoprevention for high-risk women and healthcare providers in the primary care setting Kukafka, Rita; Fang, Jiaqi; Vanegas, Alejandro; Silverman, Thomas; Crew, Katherine D. 2018 Articles Cancer--ChemopreventionBreast--CancerPrimary care (Medicine)Medical care--Decision making
48. Physiologically-based Modeling and Visualization of Deformable Lungs Santhanam, Anand P.; Pattanaik, Sumant N.; Rolland, Jannick P.; Imielinska, Celina Z.; Norfleet, Jack 2003 Conference Objects Biomedical engineeringDiagnostic imagingBioinformatics
49. Physically-based Deformation of High-Resolution 3D Lung Models for Augmented Reality based Medical Visualization Santhanam, Anand P.; Fidopiastis, Cali M.; Hamza-Lup, Felix G.; Rolland, Jannick P.; Imielinska, Celina Z. 2004 Conference Objects BioinformaticsBiomedical engineeringDiagnostic imaging
50. Phenotyping with Partially Labeled, Partially Observed Data Rodriguez, Victor Alfonso 2023 Theses BioinformaticsPhenotype