Academic Unit: Biological Sciences | Search Results

1. Developmental regulation of spine motility in the mammalian central nervous system

: Dunaevsky, Anna; Tashiro, Ayumu; Majewska, Ania; Mason, Carol Ann; Yuste, Rafael
: 1999
: Articles
: NeurosciencesCentral nervous systemMammals--DevelopmentPurkinje cellsNeurons

2. Structural consequences of cyclophilin A binding on maturational refolding in human immunodeficiency virus type 1 capsid

: Dietrich, Lars; Ehrlich, Lorna S.; LaGrassa, Tracy J.; Ebbets-Reed, Dana; Carter, Carol
: 2001
: Articles
: VirologyMedicine

3. A custom two-photon and second-harmonic microscope

: Nikolenko, Volodymyr; Nemet, Boaz; Yuste, Rafael
: 2002
: Articles
: BiologyMedical sciencesGreen fluorescent proteinDiagnostic imaging

4. Expression of stabilized β-catenin in differentiated neurons of transgenic mice does not result in tumor formation

: Kratz, John; Stearns, Duncan; Huso, David; Slunt, Hilda; Price, Donald; Borchelt, David; Eberhart, Charles
: 2002
: Articles
: MedulloblastomaEmbryonal tumorsWnt genesTransgenes--ExpressionCentral nervous system--CancerCarcinogenesisOncologyPathology

5. Hap4p overexpression in glucose-grown Saccharomyces cerevisiae induces cells to enter a novel metabolic state

: Lascaris, Romeo; Bussemaker, Harmen J.; Boorsma, André; Piper, Matt; van der Spek, Hans; Grivell, Les; Blom, Jolanda
: 2002
: Articles
: Gene regulatory networksOverexpression (Genetics)MitochondriaSaccharomyces cerevisiae--GeneticsGeneticsCytology

6. Conserved pathways within bacteria and yeast as revealed by global protein network alignment

: Kelly, Brian P.; Sharan, Roded; Karp, Richard; Sittler, Taylor; Root, David; Stockwell, Brent R.; Ideker, Trey
: 2003
: Articles
: Saccharomyces cerevisiaeHelicobacter pyloriMolecular biologyProtein-protein interactionsBiology

7. Systematic discovery of multicomponent therapeutics

: Borisy, Alexis; Elliott, Peter; Hurst, Nicole; Lee, Margaret; Lehar, Joseph; Price, E. Roydon; Serbedzija, George; Zimmerman, Grant; Foley, Michael; Stockwell, Brent R.; Keith, Curtis
: 2003
: Articles
: Bioactive compoundsMolecular biologyBiochemistryBiology

8. CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting

: Bigelow, Henry; Wenick, Adam; Wong, Allan; Hobert, Oliver
: 2004
: Articles
: GenomicsComputer softwareComputer scienceMolecular biology

9. Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data

: Gao, Feng; Foat, Barrett; Bussemaker, Harmen J.
: 2004
: Articles
: BioinformaticsGenetics

10. Expression profiling of serum inducible genes identifies a subset of SRF target genes that are MKL dependent

: Selvaraj, Ahalya; Prywes, Ron M.
: 2004
: Articles
: Molecular biologyGenetics

11. Microarrays of small molecules embedded in biodegradable polymers for use in mammalian cell-based screens

: Bailey, Steve; Sabatini, David; Stockwell, Brent R.
: 2004
: Articles
: BiomoleculesMolecular biology

12. PathBLAST: a tool for alignment of protein interaction networks

: Kelley, Brian P.; Yuan, Bingbing; Sharan, Roded; Lewitter, Fran; Stockwell, Brent R.; Ideker, Trey
: 2004
: Articles
: GenomicsProtein-protein interactionsGenetics

13. Effect of ethanol on innate antiviral pathways and HCV replication in human liver cells

: Plumlee, Courtney R.; Lazaro, Catherine; Fausto, Nelson; Polyak, Stephen
: 2005
: Articles
: Hepatitis C virusCellular signal transductionAlcohol--Psychological aspectsHost-virus relationshipsCytologyBiologyVirology

14. Two-photon uncaging of neurochemicals using inorganic metal complexes

: Nikolenko, Volodymyr; Yuste, Rafael; Zayat, Leonardo; Baraldo, Luis M.; Etchenique, Roberto
: 2005
: Articles
: BiologyMedicineNeurosciencesMedical sciences

15. Dendritic spines linearize the summation of excitatory potentials

: Araya, Roberto; Eisenthal, Kenneth B.; Yuste, Rafael
: 2006
: Articles
: Neurosciences

16. Detecting transcriptionally active regions using genomic tiling arrays

: Halasz, Gabor; van Batenburg, Marinus F.; Perusse, Joelle; Hua, Sujun; Lu, Xiang-Jun; White, Kevin P.; Bussemaker, Harmen J.
: 2006
: Articles
: Genetic transcriptionDNA probesGenomicsDNA microarraysGeneticsBioinformatics

17. Identification of inhibitors of ribozyme self-cleavage in mammalian cells via high-throughput screening of chemical libraries

: Yen, Laising; Magnier, Maxime; Weissleder, Ralph; Stockwell, Brent R.; Mulligan, Richard
: 2006
: Articles
: Genetic regulationCatalytic RNAGenetics

18. Imaging membrane potential in dendritic spines

: Nuriya, Mutsuo; Jiang, Jiang; Nemet, Boaz; Eisenthal, Kenneth B.; Yuste, Rafael
: 2006
: Articles
: Neurosciences

19. Lateral Membrane Waves Constitute a Universal Dynamic Pattern of Motile Cells

: Dobereiner, Hans-Gunther; Dubin-Thaler, Benjamin J.; Hofman, Jake M.; Xenias, Harry S.; Sims, Tasha N.; Giannone, Gregory; Dustin, Michael L.; Wiggins, Chris H.; Sheetz, Michael P.
: 2006
: Articles
: CytologyBiophysics

20. Loss of LIN-35, the Caenorhabditis elegans ortholog of the tumor suppressor p105Rb, results in enhanced RNA interference

: Lehner, Ben; Calixto, Andrea; Crombie, Catriona; Tischler, Julia; Fortunato, Angelo; Chalfie, Martin; Fraser, Andrew
: 2006
: Articles
: Caenorhabditis elegansGenomicsRNA intereferenceGeneticsBioinformaticsBiology

21. Nonmuscle Myosin IIA-Dependent Force Inhibits Cell Spreading and Drives F-Actin Flow

: Cai, Yunfei; Biais, Nicolas; Giannone, Gregory; Tanase, Monica; Jiang, Guoying; Hoffman, Jake M.; Wiggins, Chris H.; Silberzan, Pascal; Buguin, Alex; Ladoux, Benoit; Sheetz, Michael P.
: 2006
: Articles
: BiophysicsCytology

22. Rethinking ‘secondary’ metabolism: physiological roles for phenazine antibiotics

: Price-Whelan, Alexa M.; Dietrich, Lars; Newman, Dianne K.
: 2006
: Articles
: MicrobiologyBiochemistry

23. The spine neck filters membrane potentials

: Araya, Roberto; Jiang, Jiang; Eisenthal, Kenneth B.; Yuste, Rafael
: 2006
: Articles
: Neurosciences

24. Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray

: Zhang, Xiaohong; M Pinto, Jayant; De la Cruz, Omar; Nicolae, Dan; Firestein, Stuart J.; Gilad, Yoav
: 2007
: Articles
: MammalsDNA microarraysOlfactory receptorsGenomics

25. Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray

: Zhang, Xiaohong; De la Cruz, Omar; Pinto, Jayant M.; Nicolae, Dan; Firestein, Stuart; Gilad, Yoav
: 2007
: Articles
: DNA microarraysEpithelial cellsOlfactory receptorsGenomics

26. Dissecting complex transcriptional responses using pathway-level scores based on prior information

: Bussemaker, Harmen J.; Ward, Lucas; Boorsma, Andre
: 2007
: Articles
: Messenger RNADNA microarraysBiologyGenetics

27. Human pseudo exons, ~92000

: Chasin, Lawrence Allen; Ke, Shengdong; Wang, Anthony
: 2007
: Data (Information)
: Genetics

28. Identification of Potential Therapeutic Drugs for Huntington's Disease using Caenorhabditis elegans

: Voisine, Cindy; Varma, Hemant; Stockwell, Brent R.; Bates, Emily; Walker, Nicola; Hart, Anne
: 2007
: Articles
: Caenorhabditis elegansDrugs--ResearchHuntington's disease--ResearchMolecular biology

29. Inhibitors of metabolism rescue cell death in Huntington's disease models

: Varma, Hemant; Cheng, Richard; Voisine, Cindy; Hart, Anne; Stockwell, Brent R.
: 2007
: Articles
: Nervous system--DegenerationCell deathHuntington's diseaseBiochemistry

30. Optimal Signal Processing in Small Stochastic Biochemical Networks

: Ziv, Etay; Nemenman, Ilya; Wiggins, Chris H.
: 2007
: Articles
: Biochemistry

31. Sodium channels amplify spine potentials

: Araya, Roberto; Nikolenko, Volodymyr; Eisenthal, Kenneth B.; Yuste, Rafael
: 2007
: Articles
: Neurosciences

32. Circuit neuroscience: the road ahead

: Yuste, Rafael
: 2008
: Articles
: Neurosciences

33. Circuit neuroscience: the road ahead

: Yuste, Rafael
: 2008
: Articles
: BiologyMedicineNeurosciences

34. Gene expression-based screening for inhibitors of PDGFR signaling

: Antipova, Alena A.; Stockwell, Brent R.; Golub, Todd R.
: 2008
: Articles
: Cellular signal transduction--ResearchBiochemistry

35. Inhibition of casein kinase 1-epsilon induces cancer-cell-selective, PERIOD2-dependent growth arrest

: Yang, Wan Seok; Stockwell, Brent R.
: 2008
: Articles
: Protein kinasesCell cycle--RegulationCancer cells--Growth--RegulationGeneticsOncology

36. Photorelease of GABA with visible light using an inorganic caging group

: Rial Verde, Emiliano M.; Zayat, Leonardo; Etchenique, Roberto; Yuste, Rafael
: 2008
: Articles
: BiologyMedicineNeurosciences

37. Quantification of Cell Edge Velocities and Traction Forces Reveals Distinct Motility Modules during Cell Spreading

: Dubin-Thaler, Benjamin J.; Hofman, Jake M.; Cai, Yunfei; Xenias, Harry; Spielman, Ingrid; Shneidman, Anna V.; David, Lawrence A.; Dobereiner, Hans-Gunther; Wiggins, Chris H.; Sheetz, Michael P.
: 2008
: Articles
: BiophysicsCytology

38. SLM microscopy: scanless two-photon imaging and photostimulation using spatial light modulators

: Nikolenko, Volodymyr; Watson, Brendon O.; Araya, Roberto; Woodruff, Alan; Peterka, Darcy; Yuste, Rafael
: 2008
: Articles
: BiologyMedicineNeurosciences

39. Two-photon imaging with diffractive optical elements

: Watson, Brendon O.; Nikolenko, Volodymyr; Yuste, Rafael
: 2008
: Articles
: BiologyMedicineMedical sciences

40. Cholinergic receptor pathways involved in apoptosis, cell proliferation and neuronal differentiation

: Resende, Rodrigo R.; Adhikari, Avishek
: 2009
: Articles
: Acetylcholine--ReceptorsIntracellular calciumAcetylcholineBiochemistry

41. Cholinergic receptor pathways involved in apoptosis, cell proliferation and neuronal differentiation

: Resende, Rodrigo R; Adhikari, Avishek
: 2009
: Articles
: BiochemistryStem cellsAcetylcholine

42. Correlating measurements across samples improves accuracy of large-scale expression profile experiments

: Alvarez, Mariano; Sumazin, Pavel; Rajbhandari, Presha; Califano, Andrea
: 2009
: Articles
: GeneticsBioinformatics

43. Depolarizing effect of neocortical chandelier neurons

: Woodruff, Alan; Xu, Qing; Anderson, Stewart A.; Yuste, Rafael
: 2009
: Articles
: BiologyMedicineNeurosciences

44. Modulation Transfer Function for Speech Intelligibility

: Elliot, Taffeta Marie; Theunissen, Frederic E.
: 2009
: Articles
: AudiologyNeurosciences

45. Portable Scanless Microscope: Two- and One-photon Imaging and Photostimulation with Spatial Light Modulators

: Nikolenko, Volodymyr; Peterka, Darcy; Yuste, Rafael
: 2009
: Presentations (Communicative Events)
: BiologyDiagnostic imaging

46. RuBi-Glutamate: two-photon and visible-light photoactivation of neurons and dendritic spines

: Fino, Elodie; Araya, Roberto; Peterka, Darcy; Salierno, Marcelo; Etchenique, Roberto; Yuste, Rafael
: 2009
: Articles
: Neurosciences

47. Intronic motif pairs cooperate across exons to promote pre-mRNA splicing

: Ke, Shengdong; Chasin, Lawrence Allen
: 2010
: Articles
: Genetics

48. JISTIC: Identification of Significant Targets in Cancer

: Pe'er, Dana; Mozes, Eyal; Sanchez-Garcia, Felix; Akavia, Uri David
: 2010
: Articles
: OncologyBioinformatics

49. Prohibitin Homology Domain Proteins in Caenorhabditis elegans

: Kratz, John Ernest
: 2010
: Theses
: Molecular biologyGenetics

50. Spatial stimulation of the electrosensory system of mormyrid electric fish

: Roberts, Patrick; Leen, Todd; Sawtell, Nathaniel; Hunt, John F.; Case, Steven
: 2010
: Articles
: MormyridaeSenses and sensationNeurosciencesBiology

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1. Developmental regulation of spine motility in the mammalian central nervous system

2. Structural consequences of cyclophilin A binding on maturational refolding in human immunodeficiency virus type 1 capsid

3. A custom two-photon and second-harmonic microscope

4. Expression of stabilized β-catenin in differentiated neurons of transgenic mice does not result in tumor formation

5. Hap4p overexpression in glucose-grown Saccharomyces cerevisiae induces cells to enter a novel metabolic state

6. Conserved pathways within bacteria and yeast as revealed by global protein network alignment

7. Systematic discovery of multicomponent therapeutics

8. CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting

9. Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data

10. Expression profiling of serum inducible genes identifies a subset of SRF target genes that are MKL dependent

11. Microarrays of small molecules embedded in biodegradable polymers for use in mammalian cell-based screens

12. PathBLAST: a tool for alignment of protein interaction networks

13. Effect of ethanol on innate antiviral pathways and HCV replication in human liver cells

14. Two-photon uncaging of neurochemicals using inorganic metal complexes

15. Dendritic spines linearize the summation of excitatory potentials

16. Detecting transcriptionally active regions using genomic tiling arrays

17. Identification of inhibitors of ribozyme self-cleavage in mammalian cells via high-throughput screening of chemical libraries

18. Imaging membrane potential in dendritic spines

19. Lateral Membrane Waves Constitute a Universal Dynamic Pattern of Motile Cells

20. Loss of LIN-35, the Caenorhabditis elegans ortholog of the tumor suppressor p105Rb, results in enhanced RNA interference

21. Nonmuscle Myosin IIA-Dependent Force Inhibits Cell Spreading and Drives F-Actin Flow

22. Rethinking ‘secondary’ metabolism: physiological roles for phenazine antibiotics

23. The spine neck filters membrane potentials

24. Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray

25. Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray

26. Dissecting complex transcriptional responses using pathway-level scores based on prior information

27. Human pseudo exons, ~92000

28. Identification of Potential Therapeutic Drugs for Huntington's Disease using Caenorhabditis elegans

29. Inhibitors of metabolism rescue cell death in Huntington's disease models

30. Optimal Signal Processing in Small Stochastic Biochemical Networks

31. Sodium channels amplify spine potentials

32. Circuit neuroscience: the road ahead

33. Circuit neuroscience: the road ahead

34. Gene expression-based screening for inhibitors of PDGFR signaling

35. Inhibition of casein kinase 1-epsilon induces cancer-cell-selective, PERIOD2-dependent growth arrest

36. Photorelease of GABA with visible light using an inorganic caging group

37. Quantification of Cell Edge Velocities and Traction Forces Reveals Distinct Motility Modules during Cell Spreading

38. SLM microscopy: scanless two-photon imaging and photostimulation using spatial light modulators

39. Two-photon imaging with diffractive optical elements

40. Cholinergic receptor pathways involved in apoptosis, cell proliferation and neuronal differentiation

41. Cholinergic receptor pathways involved in apoptosis, cell proliferation and neuronal differentiation

42. Correlating measurements across samples improves accuracy of large-scale expression profile experiments

43. Depolarizing effect of neocortical chandelier neurons

44. Modulation Transfer Function for Speech Intelligibility

45. Portable Scanless Microscope: Two- and One-photon Imaging and Photostimulation with Spatial Light Modulators

46. RuBi-Glutamate: two-photon and visible-light photoactivation of neurons and dendritic spines

47. Intronic motif pairs cooperate across exons to promote pre-mRNA splicing

48. JISTIC: Identification of Significant Targets in Cancer

49. Prohibitin Homology Domain Proteins in Caenorhabditis elegans

50. Spatial stimulation of the electrosensory system of mormyrid electric fish