1. Conserved pathways within bacteria and yeast as revealed by global protein network alignment Kelly, Brian P.; Sharan, Roded; Karp, Richard; Sittler, Taylor; Root, David; Stockwell, Brent R.; Ideker, Trey 2003 Articles Saccharomyces cerevisiaeHelicobacter pyloriMolecular biologyProtein-protein interactionsBiology
2. Systematic discovery of multicomponent therapeutics Borisy, Alexis; Elliott, Peter; Hurst, Nicole; Lee, Margaret; Lehar, Joseph; Price, E. Roydon; Serbedzija, George; Zimmerman, Grant; Foley, Michael; Stockwell, Brent R.; Keith, Curtis 2003 Articles Bioactive compoundsMolecular biologyBiochemistryBiology
3. CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting Bigelow, Henry; Wenick, Adam; Wong, Allan; Hobert, Oliver 2004 Articles GenomicsComputer softwareComputer scienceMolecular biology
4. Expression profiling of serum inducible genes identifies a subset of SRF target genes that are MKL dependent Selvaraj, Ahalya; Prywes, Ron M. 2004 Articles Molecular biologyGenetics
5. Microarrays of small molecules embedded in biodegradable polymers for use in mammalian cell-based screens Bailey, Steve; Sabatini, David; Stockwell, Brent R. 2004 Articles BiomoleculesMolecular biology
6. Identification of Potential Therapeutic Drugs for Huntington's Disease using Caenorhabditis elegans Voisine, Cindy; Varma, Hemant; Stockwell, Brent R.; Bates, Emily; Walker, Nicola; Hart, Anne 2007 Articles Caenorhabditis elegansDrugs--ResearchHuntington's disease--ResearchMolecular biology
7. Prohibitin Homology Domain Proteins in Caenorhabditis elegans Kratz, John Ernest 2010 Theses Molecular biologyMembrane proteinsCaenorhabditis elegans--GeneticsOlfactory sensorsChemotaxisDiacetyl
8. The TRPC2 channel forms protein-protein interactions with Homer and RTP in the rat vomeronasal organ Mast, Thomas; Brann, Jessica H.; Fadool, Debra 2010 Articles NeurosciencesMolecular biology
9. Large-scale experimental studies show unexpected amino acid effects on protein expression and solubility in vivo in E. coli Hunt, John F.; Tong, Saichiu; Bracic, Ana; Luff, Jon; Naumov, Victor; Acton, Thomas; Manor, Philip; Xiao, Rong; Rost, Burkhard; Montelione, Gaetano; Everett, John; Price, W. Nicholson; Handelman, Samuel 2011 Articles Molecular biologyBiochemistry
10. Pro-inflammatory endothelial cell dysfunction is associated with intersectin-1s down-regulation Singla, Sunit; Predescu, Dan; Bardita, Cristina; Wang, Minhua; Zhang, Jian; Balk, Robert; Predescu, Sanda 2011 Articles Endothelial cellsApoptosisGeneticsMolecular biology
11. Regulation of alternative splicing and its connections to cancer Chen, Mo 2011 Theses BiologyMolecular biologyBiochemistryRNA splicingPyruvate kinaseCancer cellsExons (Genetics)Mammals--Genetics
12. Studies on mammalian pre-mRNA splicing : connections to transcription and cancer David, Charles J. 2011 Theses BiochemistryMolecular biologyRNA splicingCancer--Genetic aspectsCancer cellsMammals--GeneticsGlycolysis
13. Studies on the mechanisms that contribute to the endoplasmic reticulum quality control system in Saccharomyces cerevisiae Dorrington Quinones, Mariana 2011 Theses Molecular biologySaccharomyces cerevisiaeEndoplasmic reticulumProtein foldingProteins--Synthesis
15. Modular assembly of yeast cytochrome oxidase McStay, Gavin Peter; Su, Chen-Hsien; Tzagoloff, Alexander A. 2012 Articles Molecular biologyBiologyEvolution (Biology)
16. The Endoplasmic Spreading Mechanism of Fibroblasts: Showcasing the Integrated Cytoskeleton Lynch, Christopher D. 2012 Theses CytologyBiophysicsMolecular biology
17. Trans-Acting Factors Affecting Retroviral Recoding Green, Lisa Christine 2012 Theses VirologyMolecular biology
18. Designer Exons Inform a Biophysical Model for Exon Definition Arias, Mauricio A. 2013 Theses Exons (Genetics)Molecular biologyBiophysicsMessenger RNABiology
19. Elucidating the Biological Function of PWWP-Domain Containing Protein Complexes Reddy, Bharat 2013 Theses BiologyGeneticsMolecular biology
20. Mapping Differentiation under Mixed Culture Conditions Reveals a Tunable Continuum of T Cell Fates Antebi, Yaron E.; Reich-Zeliger, Shlomit; Hart, Yuval; Mayo, Avi; Eizenberg, Inbal; Rimer, Jacob; Putheti, Prabhakar; Pe'er, Dana; Friedman, Nir 2013 Articles CytokinesCell differentiationT cellsMolecular biologyCytologyImmunology
21. Players in the silencing of retroviral DNAs in embryonic stem cells Schlesinger, Sharon; Wang, Gary Zhe; Lee, Andreia H.; Goff, Stephen P. 2013 Presentations (Communicative Events) Retrovirus infectionsGene silencingEmbryonic stem cellsVirologyMolecular biology
22. Re-thinking the role of ribosomal proteins in the Mdm2-p53 axis Daftuar, Lilyn 2013 Theses Molecular biology
23. Ribosomal Proteins RPL37, RPS15 and RPS20 Regulate the Mdm2-p53-MdmX Network Daftuar, Lilyn; Zhu, Yan; Jacq, Xavier; Prives, Carol L. 2013 Articles Small interfering RNANucleoproteinsGene expressionUbiquitinMolecular biologyBiology
24. Serum Regulation of Inhibitor of DNA Binding/Differentiation 1 Expression by a BMP Pathway and BMP Responsive El Lewis, Thera Cathy 2013 Theses BiologyMolecular biology
25. Structural and Biochemical Characterizations of the Symplekin-Ssu72-CTD Complex in Pre-mRNA 3' end Processing Xiang, Kehui 2013 Theses BiochemistryGenetic transcriptionRNA polymerasesBiologyMolecular biology
26. Structure Determination and Biochemical Characterization of a Putative HNH Endonuclease from Geobacter metallireducens GS-15 Xu, Shuang-yong; Kuzin, Alexandre P.; Seetharaman, Jayaraman; Gutjahr, Alice; Chan, Siu-Hong; Chen, Yang; Xiao, Rong; Acton, Thomas B.; Montelione, Gaetano T.; Tong, Liang 2013 Articles DimersProteins--StructureEndonucleasesBiochemistryMolecular biology
27. The COMBREX Project: Design, Methodology, and Initial Results Anton, Brian P.; Chang, Yi-Chien; Brown, Peter; Choi, Han-Pil; Faller, Lina L.; Guleria, Jyotsna; Hu, Zhenjun; Klitgord, Niels; Levy-Moonshine, Ami; Maksad, Almaz; Mazumdar, Varun; McGettrick, Mark; Osmani, Lais; Pokrzywa, Revonda; Rachlin, John; Swaminathan, Rajeswari; Allen, Benjamin; Housman, Genevieve; Monahan, Caitlin; Rochussen, Krista; Tao, Kevin; Bhagwat, Ashok S.; Brenner, Steven E.; Columbus, Linda; de Crécy-Lagard, Valérie; Ferguson, Donald; Fomenkov, Alexey; Gadda, Giovanni; Morgan, Richard D.; Osterman, Andrei L.; Rodionov, Dmitry A.; Rodionova, Irina A.; Rudd, Kenneth E.; Söll, Dieter; Spain, James; Xu, Shuang-yong; Bateman, Alex; Blumenthal, Robert M.; Bollinger, J. Martin; Chang, Woo-Suk; Ferrer, Manuel; Friedberg, Iddo; Galperin, Michael Y.; Gobeill, Julien; Haft, Daniel; Hunt, John F.; Karp, Peter; Klimke, William; Krebs, Carsten; Macelis, Dana; Madupu, Ramana; Martin, Maria J.; Miller, Jeffrey H.; O'Donovan, Claire; Palsson, Bernhard; Ruch, Patrick; Setterdahl, Aaron; Sutton, Granger; Tate, John; Yakunin, Alexander; Tchigvintsev, Dmitri; Plata, German Alonso; Hu, Jie; Greiner, Russell; Horn, David; Sjölander, Kimmen; Salzberg, Steven L.; Vitkup, Dennis; Letovsky, Stanley; Segrè, Daniel; DeLisi, Charles; Roberts, Richard J.; Steffen, Martin; Kasif, Simon 2013 Articles Nucleotide sequenceGenomics--Data processingMicrobial proteinsMolecular biologyMicrobiologyBioinformatics
28. The functions of the RNA polymerase II CTD in transcription and RNA processing Hsin, Jing-Ping 2013 Theses Molecular biologyCytology
29. The Role of Mga in the Survival of Pluripotent Cells During Peri-implantation Development Washkowitz, Andrew 2013 Theses GeneticsMolecular biology
30. Candida albicans Ethanol Stimulates Pseudomonas aeruginosa WspR-Controlled Biofilm Formation as Part of a Cyclic Relationship Involving Phenazines Chinweike, Okegbe; Dietrich, Lars 2014 Articles BiochemistryMicrobiologyMolecular biology
31. Integrated circuit-based electrochemical sensor for spatially resolved detection of redox-active metabolites in biofilms Bellin, Daniel L.; Sakhtah, Hassan; Thimot, Jordan; Emmett, Kevin; Dietrich, Lars; Shepard, Kenneth L. 2014 Articles Molecular biologyElectrical engineeringNanotechnologyBiophysics
32. Molecular Basis for the Recognition of the Regulatory Stem-loop Structures in Eukaryotic Messenger RNAs Tan, Dazhi 2014 Theses Messenger RNARNA-protein interactionsEukaryotic cellsBiologyBiochemistryMolecular biology
33. The Proper Splicing of RNAi Factors Is Critical for Pericentric Heterochromatin Assembly in Fission Yeast Kallgren, Scott P.; Andrews, Stuart J.; Tadeo, Xavier; Hou, Haitong; Moresco, James J.; Tu, Patricia G.; Yates III, John R.; Nagy, Peter L.; Jia, Songtao 2014 Articles RNA intereferenceHeterochromatinRNA splicingGeneticsBiologyMolecular biology
34. The Roles of Splicing and H2A.Z in Chromatin Assembly Kallgren, Scott 2014 Theses Gene silencingCell differentiationRNA intereferenceChromatinMolecular biology
35. Deciphering End Resection in Double-Strand Break repair in Saccharomyces cerevisiae Chen, Huan 2015 Theses Saccharomyces cerevisiaeDNA repairDNA damageBiologyMolecular biologyGenetics
36. Deciphering the Role of p24 Proteins in COPII-mediated Protein Secretion D'Arcangelo, Jennifer G. 2015 Theses Endoplasmic reticulumMolecular geneticsProteins--SecretionCytologyMolecular biologyGenetics
37. Global Survey of Cell Death Mechanisms Reveals Metabolic Regulation of GPX4-Dependent Ferroptosis Shimada, Kencihi 2015 Theses HomeostasisMetabolismBioinformaticsPharmacologyCell deathMolecular biology
38. Mutant p53 cooperates with the SWI/SNF chromatin remodeling complex to mediate VEGFR2 expression in breast cancer cells Pfister, Neil Thomas 2015 Theses Vascular endothelial growth factorsTranscription factorsMutation (Biology)OncologyMolecular biologyMedicine
39. Structural Studies of the Fungal pre-mRNA 3'-end Processing Machinery Jurado, Ashley Rae 2015 Theses ProteinsRNA splicingScission (Chemistry)Messenger RNAMolecular biologyBiologyBiochemistry
40. Applying medicinal chemistry strategies to understand odorant discrimination Poivet, Erwan E.; Peterlin, Zita; Tahirova, Narmin Tahir; Xu, Lu; Altomare, Clara Gilda; Paria, Anne; Zou, Dong-Jing; Firestein, Stuart J. 2016 Articles Pharmaceutical chemistryOdorsOlfactory receptorsMolecular biologyChemistry
41. Ras, p63 and breast cancer Yoh, Kathryn Elizabeth 2016 Theses Breast--CancerCarcinogenesisBreast--Cancer--EtiologyMesenchymeTumor suppressor proteinsOncologyMolecular biology
42. XRN2 Links Transcription Termination to DNA Damage and Replication Stress Morales, Julio C.; Richard, Patricia; Patidar, Praveen L.; Motea, Edward A.; Dang, Tuyen T.; Manley, James L.; Boothman, David A. 2016 Articles DNA damageGenetic transcriptionSmall interfering RNAGeneticsMolecular biology
43. Proprioceptor subtype identity specified by limb-derived signals Norovich, Amy L. 2017 Theses NeurosciencesMolecular biologyProprioceptorsSensory neurons
44. Replication stress affects the fidelity of nucleosome-mediated epigenetic inheritance Li, Wenzhu; Yi, Jia; Agbu, Pamela; Zhou, Zheng; Kelley, Richard L.; Kallgren, Scott; Jia, Songtao; He, Xiangwei 2017 Articles DNA replicationEpigeneticsHeredityMolecular biologyGenetics
45. Unraveling the link between the Mdm2-p53 axis and aging Wu, Danyi 2017 Theses BiologyMolecular biologyAgingp53 protein
46. Using Genomic Transgenes and the CRISPR/Cas9 Gene Editing System to Understand How Hedgehog Signaling Regulates Costal2 and Cubitus Interruptus in Drosophila melanogaster Little, Jamie 2017 Theses BiologyHedgehog proteinsMolecular biologyGenes
47. Watching the Replisome: Single-molecule Studies of Eukaryotic DNA Replication Duzdevich, Daniel 2017 Theses DNA replicationMolecular biologyCytologyEukaryotic cells--GeneticsBiologyBiophysics
48. Regulation of Parkin Protein Levels by L-3,4-dihydroxyphenylalanine Kovalchuke, Lyudmila 2018 Theses Molecular biologyPathologyNeurosciencesParkinson's diseaseDopa
49. Shared Molecular Features of Inherited and Sporadic ALS/FTD Conlon, Erin Grace 2018 Theses BiochemistryGeneticsNeurosciencesAmyotrophic lateral sclerosisFrontotemporal dementiaMolecular biology
50. The Molecular Mechanism of Replication Independent Repair of DNA Interstrand Crosslinks Kato, Niyo 2018 Theses BiologyGeneticsDNA repairCrosslinking (Polymerization)Molecular biology