1. A Comparative Analysis of Genome Rearrangement in Ciliates Feng, Yi 2021 Theses BiologyBioinformaticsEvolution (Biology)Gene rearrangementCiliata--GeneticsEuplotesGenetic code
2. Characterizing molecular drivers of clinical outcome in pediatric acute leukemias by systems biology and machine learning Alloy, Alexandre Paul 2021 Theses BioinformaticsLeukemia--Genetic aspectsLeukemia in childrenMachine learningAcute leukemia
3. Systems Genetics of DNA Damage Tolerance – Cisplatin, RAD5 & CRISPR-mediated Nonsense Bryant, Eric Edward 2019 Theses GeneticsBioinformaticsBiology--ClassificationDNA damageCisplatinCRISPR (Genetics)
4. A Single-Cell Immune Map of Normal and Cancerous Breast Reveals an Expansion of Phenotypic States Driven by the Tumor Microenvironment Carr, Ambrose James 2018 Theses BioinformaticsOncologyComputer scienceImmunologyTumors
5. The generation and phenotypic effect of human genetic mutations Chen, Chen 2018 Theses BioinformaticsComputer scienceMutation (Biology)Human genetics--VariationMachine learning
6. Learning cell states from high-dimensional single-cell data Levine, Jacob Harrison 2016 Theses BioinformaticsCells--MeasurementMyeloid leukemiaCells--Computer programsBiologyOncology
7. Systems Biology Approaches to The Study of Neurological Disorders and Somatic Cell Reprogramming Shin, William Kihoon 2016 Theses Cell hybridizationCentral nervous system--DiseasesNervous system--DegenerationGenetic transcriptionBioinformaticsNeurosciencesBiology--Classification
8. Global Survey of Cell Death Mechanisms Reveals Metabolic Regulation of GPX4-Dependent Ferroptosis Shimada, Kencihi 2015 Theses HomeostasisMetabolismBioinformaticsPharmacologyCell deathMolecular biology
9. Heterogeneity and Context-Specificity in Biological Systems Litvin, Oren 2014 Theses BiologyBioinformaticsGenetics—ResearchBacterial diversity--Genetic aspectsGenetics--Mathematical models
10. viSNE and Wanderlust, two algorithms for the visualization and analysis of high-dimensional single-cell data Amir, El-ad David 2014 Theses ImmunologyBioinformatics
11. Analyzing Genomic Studies and a Screen for Genes that Suppress Information Loss During DNA Damage Repair Pierce, Steven 2013 Theses BiologyCytologyBioinformatics
12. A Novel Platform to Perform Cancer-Relevant Synthetic Dosage Lethality Screens in Saccharomyces cerevisiae Dittmar, John 2013 Theses BioinformaticsBiologyGenetics
13. Dissecting genetic determinants of transcription factor activity Lee, Eunjee 2013 Theses BiologyBioinformatics