1. Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding Rao, Satyanarayan; Chiu, Tsu-Pei; Kribelbauer, Judith F.; Mann, Richard S.; Bussemaker, Harmen J.; Rohs, Remo 2018 Articles DNA--MethylationEpigeneticsDNA-binding proteinsSystems biology
2. Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes Kribelbauer, Judith F.; Laptenko, Oleg; Chen, Siying; Martini, Gabriella D.; Freed-Pastor, William Allen; Prives, Carol L.; Mann, Richard S.; Bussemaker, Harmen J. 2017 Articles DNA--MethylationTranscription factorsGenetic regulationDNA-protein interactionsEpigenetics
3. Replication stress affects the fidelity of nucleosome-mediated epigenetic inheritance Li, Wenzhu; Yi, Jia; Agbu, Pamela; Zhou, Zheng; Kelley, Richard L.; Kallgren, Scott; Jia, Songtao; He, Xiangwei 2017 Articles DNA replicationEpigeneticsHeredityMolecular biologyGenetics
4. Histone Methylation Restrains the Expression of Subtype-Specific Genes during Terminal Neuronal Differentiation in Caenorhabditis elegans Zheng, Chaogu; Karimzadegan, Siavash; Chiang, Victor; Chalfie, Martin 2013 Articles NeuronsHistonesGene expressionDNA-binding proteinsEpigeneticsGenetics