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1. Accurate and sensitive quantification of protein-DNA binding affinity

: Rastogi, Chaitanya; Rube, Hans Tomas; Kribelbauer, Judith Franziska; Crocker, Justin; Loker, Ryan Edmund; Martini, Gabriella D.; Laptenko, Oleg; Freed-Pastor, William Allen; Prives, Carol L.; Stern, David L.; Mann, Richard S.; Bussemaker, Harmen J.
: 2018
: Articles
: Transcription factorsDNA-protein interactionsProtein bindingProbabilities--Mathematical models

2. cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg

: Newcomb, Susan Elizabeth; Voutev, Roumen; Jory, Aurelie E.; Delker, Rebecca; Slattery, Matthew; Mann, Richard S.
: 2018
: Articles
: Drosophila melanogaster--GeneticsGrowth factors--ReceptorsCloningBiologyGene expression

3. Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding

: Rao, Satyanarayan; Chiu, Tsu-Pei; Kribelbauer, Judith F.; Mann, Richard S.; Bussemaker, Harmen J.; Rohs, Remo
: 2018
: Articles
: DNA--MethylationEpigeneticsDNA-binding proteinsSystems biology

4. Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes

: Kribelbauer, Judith F.; Laptenko, Oleg; Chen, Siying; Martini, Gabriella D.; Freed-Pastor, William Allen; Prives, Carol L.; Mann, Richard S.; Bussemaker, Harmen J.
: 2017
: Articles
: DNA--MethylationTranscription factorsGenetic regulationDNA-protein interactionsEpigenetics

5. Identifying candidate drivers of alcohol dependence-induced excessive drinking by assembly and interrogation of brain-specific regulatory networks

: Repunte-Canonigo, Vez; Shin, William Kihoon; Vendruscolo, Leandro F.; Lefebvre, Celine; van der Stap, Lena; Kawamura, Tomoya; Schlosburg, Joel E.; Alvarez, Mariano Javier; Koob, George F.; Califano, Andrea; Sanno, Pietro Paolo
: 2015
: Articles
: Gene regulatory networksAlcoholismBiology--Classification