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1. Accurate and sensitive quantification of protein-DNA binding affinity

Rastogi, Chaitanya; Rube, Hans Tomas; Kribelbauer, Judith Franziska; Crocker, Justin; Loker, Ryan Edmund; Martini, Gabriella D.; Laptenko, Oleg; Freed-Pastor, William Allen; Prives, Carol L.; Stern, David L.; Mann, Richard S.; Bussemaker, Harmen J.
2018
Articles
Transcription factorsDNA-protein interactionsProtein bindingProbabilities--Mathematical models

2. cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg

Newcomb, Susan Elizabeth; Voutev, Roumen; Jory, Aurelie E.; Delker, Rebecca; Slattery, Matthew; Mann, Richard S.
2018
Articles
Drosophila melanogaster--GeneticsGrowth factors--ReceptorsCloningBiologyGene expression

3. Concentration-Dependent Exchange of Replication Protein A on Single-Stranded DNA Revealed by Single-Molecule Imaging

Gibb, Bryan; Ye, Ling Feng; Gergoudis, Stephanie C.; Kwon, YoungHo; Niu, Hengyao; Sung, Patrick; Greene, Eric C.
2014
Articles
Protein bindingDNA--MetabolismSaccharomyces cerevisiae--GeneticsGenetics

4. Identifying candidate drivers of alcohol dependence-induced excessive drinking by assembly and interrogation of brain-specific regulatory networks

Repunte-Canonigo, Vez; Shin, William Kihoon; Vendruscolo, Leandro F.; Lefebvre, Celine; van der Stap, Lena; Kawamura, Tomoya; Schlosburg, Joel E.; Alvarez, Mariano Javier; Koob, George F.; Califano, Andrea; Sanno, Pietro Paolo
2015
Articles
Gene regulatory networksAlcoholismBiology--Classification

5. Large-scale experimental studies show unexpected amino acid effects on protein expression and solubility in vivo in E. coli

Hunt, John F.; Tong, Saichiu; Bracic, Ana; Luff, Jon; Naumov, Victor; Acton, Thomas; Manor, Philip; Xiao, Rong; Rost, Burkhard; Montelione, Gaetano; Everett, John; Price, W. Nicholson; Handelman, Samuel
2011
Articles
Molecular biologyBiochemistry

6. Mechanochemical Methods for Single Molecule Biochemistry and Studies of Thiol-Disulfide Exchange in Proteins

Kosuri, Pallav
2012
Theses
BiophysicsBiochemistryBiology

7. Players in the silencing of retroviral DNAs in embryonic stem cells

Schlesinger, Sharon; Wang, Gary Zhe; Lee, Andreia H.; Goff, Stephen P.
2013
Presentations (Communicative Events)
Retrovirus infectionsGene silencingEmbryonic stem cellsVirologyMolecular biology

8. Proviral Silencing in Embryonic Cells is Regulated by Yin Yang 1

Schlesinger, Sharon; Lee, Andreia H.; Wang, Gary Zhe; Green, Lisa; Goff, Stephen P.
2013
Articles
CytologyVirologyGenetics

9. Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes

Kribelbauer, Judith F.; Laptenko, Oleg; Chen, Siying; Martini, Gabriella D.; Freed-Pastor, William Allen; Prives, Carol L.; Mann, Richard S.; Bussemaker, Harmen J.
2017
Articles
DNA--MethylationTranscription factorsGenetic regulationDNA-protein interactionsEpigenetics

10. Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding

Rao, Satyanarayan; Chiu, Tsu-Pei; Kribelbauer, Judith F.; Mann, Richard S.; Bussemaker, Harmen J.; Rohs, Remo
2018
Articles
DNA--MethylationEpigeneticsDNA-binding proteinsSystems biology
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