Academic Unit: Biological Sciences and Biochemistry and Molecular Biophysics / Language: English | Search Results | Academic Commons

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1. Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding

: Rao, Satyanarayan; Chiu, Tsu-Pei; Kribelbauer, Judith F.; Mann, Richard S.; Bussemaker, Harmen J.; Rohs, Remo
: 2018
: Articles
: DNA--MethylationEpigeneticsDNA-binding proteinsSystems biology

2. Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes

: Kribelbauer, Judith F.; Laptenko, Oleg; Chen, Siying; Martini, Gabriella D.; Freed-Pastor, William Allen; Prives, Carol L.; Mann, Richard S.; Bussemaker, Harmen J.
: 2017
: Articles
: DNA--MethylationTranscription factorsGenetic regulationDNA-protein interactionsEpigenetics

3. Proviral Silencing in Embryonic Cells is Regulated by Yin Yang 1

: Schlesinger, Sharon; Lee, Andreia H.; Wang, Gary Zhe; Green, Lisa; Goff, Stephen P.
: 2013
: Articles
: CytologyVirologyGenetics

4. Players in the silencing of retroviral DNAs in embryonic stem cells

: Schlesinger, Sharon; Wang, Gary Zhe; Lee, Andreia H.; Goff, Stephen P.
: 2013
: Presentations (Communicative Events)
: Retrovirus infectionsGene silencingEmbryonic stem cellsVirologyMolecular biology

5. Mechanochemical Methods for Single Molecule Biochemistry and Studies of Thiol-Disulfide Exchange in Proteins

: Kosuri, Pallav
: 2012
: Theses
: BiophysicsBiochemistryBiology

6. Large-scale experimental studies show unexpected amino acid effects on protein expression and solubility in vivo in E. coli

: Hunt, John F.; Tong, Saichiu; Bracic, Ana; Luff, Jon; Naumov, Victor; Acton, Thomas; Manor, Philip; Xiao, Rong; Rost, Burkhard; Montelione, Gaetano; Everett, John; Price, W. Nicholson; Handelman, Samuel
: 2011
: Articles
: Molecular biologyBiochemistry

7. Identifying candidate drivers of alcohol dependence-induced excessive drinking by assembly and interrogation of brain-specific regulatory networks

: Repunte-Canonigo, Vez; Shin, William Kihoon; Vendruscolo, Leandro F.; Lefebvre, Celine; van der Stap, Lena; Kawamura, Tomoya; Schlosburg, Joel E.; Alvarez, Mariano Javier; Koob, George F.; Califano, Andrea; Sanno, Pietro Paolo
: 2015
: Articles
: Gene regulatory networksAlcoholismBiology--Classification

8. Concentration-Dependent Exchange of Replication Protein A on Single-Stranded DNA Revealed by Single-Molecule Imaging

: Gibb, Bryan; Ye, Ling Feng; Gergoudis, Stephanie C.; Kwon, YoungHo; Niu, Hengyao; Sung, Patrick; Greene, Eric C.
: 2014
: Articles
: Protein bindingDNA--MetabolismSaccharomyces cerevisiae--GeneticsGenetics

9. cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg

: Newcomb, Susan Elizabeth; Voutev, Roumen; Jory, Aurelie E.; Delker, Rebecca; Slattery, Matthew; Mann, Richard S.
: 2018
: Articles
: Drosophila melanogaster--GeneticsGrowth factors--ReceptorsCloningBiologyGene expression

10. Accurate and sensitive quantification of protein-DNA binding affinity

: Rastogi, Chaitanya; Rube, Hans Tomas; Kribelbauer, Judith Franziska; Crocker, Justin; Loker, Ryan Edmund; Martini, Gabriella D.; Laptenko, Oleg; Freed-Pastor, William Allen; Prives, Carol L.; Stern, David L.; Mann, Richard S.; Bussemaker, Harmen J.
: 2018
: Articles
: Transcription factorsDNA-protein interactionsProtein bindingProbabilities--Mathematical models