1. Understanding complex biomolecular systems through the synergy of molecular dynamics simulations, NMR spectroscopy and X-Ray crystallography Zeiske, Tim 2016 Theses Molecular dynamics--Simulation methodsMolecular dynamics--Computer simulationNuclear magnetic resonance spectroscopyBiomolecules--Computer simulationX-ray crystallographyMacromolecules--StructureMolecular dynamicsBiophysicsBiochemistry
2. The Thrombopoietin Receptor Can Mediate Proliferation Without Activation of the Jak-STAT Pathway Dorsch, Marion; Fan, Pang-Dian; Danial, Nika N.; Rothman, Paul B.; Goff, Stephen P. 1997 Articles Molecular biologyBiochemistryMedicine
3. Thermal adaptation of conformational dynamics in ribonuclease H Stafford, Kate 2013 Theses Biochemistry
4. The rate of the molecular clock and the cost of gratuitous protein synthesis Plata, Germán Alonso; Gottesman, Maxwell E.; Vitkup, Dennis 2010 Articles Molecular biologyBiochemistry
5. Targeted DNA integration in human cells without double-strand breaks using CRISPR-associated transposases King, Rebeca Teresa 2023 Theses GeneticsBiochemistryPersonalized medicineCRISPR (Genetics)DNA-binding proteinsNucleasesDouble-stranded RNA
6. Synthesis of a 600-nucleotide-long plus-strand DNA by virions of Moloney murine leukemia virus Mitra, Sudha W.; Goff, Stephen P.; Gilboa, Eli; Baltimore, David 1979 Articles Mouse leukemia virusesDNA--ResearchViral carcinogenesis--Genetic aspectsMolecular biology--ResearchBiochemistry
7. Structure of a cloned circular Moloney murine leukemia virus DNA molecule containing an inverted segment: implications for retrovirus integration Shoemaker, Charles; Goff, Stephen P.; Gilboa, Eli; Paskind, Michael; Mitra, Sudha W.; Baltimore, David 1980 Articles RetrovirusesAntiviral agentsMouse leukemia virusesRetroviruses--GeneticsBiochemistry
8. Structure and Neutralization of Viral Fusion Proteins Casner, Ryan Gavin 2023 Theses BiochemistryCOVID-19 (Disease)ImmunoglobulinsCryoelectronicsVaccines--Design
9. Structural Studies of a Mammalian Epithelial Calcium Channel Saotome, Kei 2016 Theses Calcium--Physiological effectBiochemistryTRP channelsCalcium channels
10. Structural Plasticity and Conformational Transitions of HIV Envelope Glycoprotein gp120 Korkut, Anil; Hendrickson, Wayne A. 2012 Articles HIV infectionsGlycoproteinsProteins--StructureBiochemistry
11. Structural and biophysical studies of the Drosophila melanogaster Dpr and DIP families Cosmanescu, Filip 2018 Theses BiochemistryNeurosciencesBiophysicsDrosophila melanogasterNeurons
12. Structural and Biophysical Studies of Hair Cell Mechanotransduction Proteins Dionne, Gilman 2020 Theses BiochemistryBiophysicsHair cellsProteinsCellular signal transduction--Research
13. Structural and biophysical characterization of protocadherin extracellular regions Wolcott, Holly Noelle 2014 Theses BiochemistryBiophysics
14. Solving Challenging Structures using Single-Particle Cryogenic Electron Microscopy Tan, Yong Zi 2019 Theses BiochemistryBiophysicsElectron microscopyMacromolecules--StructureRibosomesMembrane proteinsCytology--Technique
15. RPGRIP1L and FTO – genes implicated in the effects of FTO intronic sequence variants on food intake – also affect adipogenesis and adipocyte biology. Martin-Carli, Jayne Frances 2017 Theses BiochemistryCytologyMolecular biologyObesity--Genetic aspects
16. Routine single particle CryoEM sample and grid characterization by tomography Noble, Alex J.; Dandey, Venkata P.; Wei, Hui; Brasch, Julia; Chase, Jillian; Acharya, Priyamvada; Tan, Yong Zi; Zhang, Zhening; Kim, Laura Y.; Scapin, Giovanna; Rapp, Micah Allen; Eng, Edward T.; Rice, William J.; Cheng, Anchi; Negro, Carl J.; Shapiro, Lawrence S.; Kwong, Peter D.; Jeruzalmi, David; des Georges, Amedee; Potter, Clinton; Carragher, Bridget 2018 Articles TomographyBiochemistryParticlesBiophysicsElectron microscopy
17. RNA force field with accuracy comparable to state-of-the-art protein force fields Tan, Dazhi; Piana, Stefano; Dirks, Robert M.; Shaw, David Elliot 2018 Articles BiochemistryBiophysicsRNA-protein interactionsMolecular dynamicsNucleic acids
18. Regulation of Release Factor 2 in Non-canonical Translation Pathways Huang, Bridget Yih Jiin 2017 Theses Bacterial proteinsRibosomesBiochemistryProteins--SynthesisBiophysics
19. Quantification of gait parameters in freely walking wild type and sensory deprived Drosophila melanogaster Mendes, Cesar; Bartos, Imre; Akay, Turgay; Marka, Szabolcs; Mann, Richard S. 2013 Articles BiochemistryBiophysicsNeurosciences
20. PrePPI: a structure-informed database of protein–protein interactions Zhang, Qiangfeng Cliff; Petrey, Donald S.; Garzon Canas, Jose I.; Deng, Lei; Honig, Barry 2012 Articles BiochemistryMolecular biologyBiomedical engineering
21. Oxidative Folding in Bacteria: Studies Using Single Molecule Force Spectroscopy Kahn, Thomas 2016 Theses Protein foldingOxidoreductasesEscherichia coli--PhysiologyOxidationBiophysicsBiochemistry
22. Orientations and Proximities of the Extracellular Ends of Transmembrane Helices S0 and S4 in Open and Closed BK Potassium Channels Niu, Xiaowei; Liu, Guoxia; Wu, Roland; Chudasama, Neelesh; Zakharov, Sergey; Karlin, Arthur; Marx, Steven O. 2013 Articles BiochemistryMolecular biologyBiophysicsMedicine
23. Nuclear matrix protein Matrin 3 is a regulator of ZAP-mediated retroviral restriction Erazo, Angela; Goff, Stephen P. 2015 Articles Gene expressionNuclear matrixRetrovirusesAntiretroviral agentsMolecular biologyBiochemistry
24. Nanoscale Electrical and Coarse-grained Molecular Dynamics Studies of Influenza Hemagglutinin-mediated Membrane Fusion Pores Alcott, Brett Eugene 2017 Theses BiophysicsBiochemistryVirologyMolecular dynamicsMembrane fusion
25. Molecular Mechanisms Controlling Synaptic Vesicle Fusion Radoff, Daniel Todd 2011 Theses BiochemistrySynaptic vesiclesCell membranesMembrane proteins
26. Membrane potential and Ca2+ concentration dependence on pressure and vasoactive agents in arterial smooth muscle: A model Karlin, Arthur 2015 Articles Molecular biologyBiochemistryPhysiology
27. Membrane Interaction of Bound Ligands Contributes to the Negative Binding Cooperativity of the EGF Receptor Arkhipov, Anton; Shan, Yibing; Kim, Eric T.; Shaw, David Elliot 2014 Articles Cell membranesCrystals--StructureDimersBiochemistry
28. Mechanochemical Methods for Single Molecule Biochemistry and Studies of Thiol-Disulfide Exchange in Proteins Kosuri, Pallav 2012 Theses BiophysicsBiochemistryBiology
29. Learning from cadherin structures and sequences: affinity determinants and protein architecture Felsovalyi, Klara 2014 Theses Protein bindingCadherinsBiochemistryBioinformaticsBiophysics
30. Large-scale experimental studies show unexpected amino acid effects on protein expression and solubility in vivo in E. coli Hunt, John F.; Tong, Saichiu; Bracic, Ana; Luff, Jon; Naumov, Victor; Acton, Thomas; Manor, Philip; Xiao, Rong; Rost, Burkhard; Montelione, Gaetano; Everett, John; Price, W. Nicholson; Handelman, Samuel 2011 Articles Molecular biologyBiochemistry
31. Interactions of Host Proteins with the Murine Leukemia Virus Integrase Studamire, Barbara; Goff, Stephen P. 2010 Articles PathologyMolecular biologyBiochemistry
32. Integration of EGFR and LIN-12/Notch signaling in Vulval Precursor Cell fate specification in Caenorhabditis elegans Underwood, Ryan 2018 Theses BiochemistryMetazoaCell interactionCellular signal transductionBiophysics
33. Host Proteins Interacting with the Moloney Murine Leukemia Virus Integrase: Multiple Transcriptional Regulators and Chromatin Binding Factors Studamire, Barbara; Goff, Stephen P. 2008 Articles VirologyOncologyBiochemistry
34. Expression of enzymatically active reverse transcriptase in Escherichia coli Tanese, Naoko; Roth, Monica; Goff, Stephen P. 1985 Articles Genetic transcription--ResearchMouse leukemia virusesCatalytic RNAMolecular biologyBiochemistry
35. Dynamic Instability of Genomic Methylation Patterns in Pluripotent Stem Cells Ooi, Steen K. T.; Wolf, Daniel; Hartung, Odelya; Agarwal, Suneet; Daley, George Q.; Goff, Stephen P.; Bestor, Timothy H. 2010 Articles GeneticsMolecular biologyBiochemistry
36. Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES Pisareva, Vera P.; Pisarev, Andrey V.; Fernández, Israel S. 2018 Articles VirologyRNAHepatitis C virusBiochemistry
37. Domain structure of the Moloney murine leukemia virus reverse transcriptase: mutational analysis and separate expression of the DNA polymerase and RNase H activities Tanese, Naoko; Goff, Stephen P. 1988 Articles Mouse leukemia virusesRetroviruses--GeneticsRecombinant proteinsBiochemistryInsertional mutagenesis
38. Differential effects of natural rewards and pain on vesicular glutamate transporter expression in the nucleus accumbens Manders, Toby R.; Ziff, Edward B.; Wang, Jing; Turkey, David S.; Lee, Michelle; Xu, Duo; Eberle, Sarah E.; Goffer, Yossef 2013 Articles BiochemistryNeurosciences
39. Developmental Regulation of Chromatin Conformation by Hox Proteins in Drosophila Angelopoulos, Marios; McKay, Daniel J.; Mann, Richard S. 2012 Articles BiochemistryBiophysics
40. Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8 Soto, Cinque; Ofek, Gilad; Joyce, M. Gordon; Zhang, Baoshan; McKee, Krisha; Longo, Nancy S.; Yang, Yongping; Huang, Jinghe; Parks, Robert; Eudailey, Joshua; Lloyd, Krissey E.; Alam, S. Munir; Haynes, Barton F.; Mullikin, James C.; Connors, Mark; Mascola, John R.; Shapiro, Lawrence S.; Kwong, Peter D.; NISC Comparative Sequencing Program 2016 Articles Neutralization (Chemistry)ImmunoglobulinsPhylogenyHIV infectionsBiochemistryBiology
41. CysZ: Structural and Functional Studies of a Novel Sulfate Transport Protein Assur, Zahra 2013 Theses CytologyCarrier proteinsBiochemistryBiophysics
42. Correlating protein function and stability through the analysis of single amino acid substitutions Bromberg, Yana; Rost, Burkhard 2009 Articles BioinformaticsBiochemistry
43. C-Abl Is Required for the Development of Hyperoxia-Induced Retinopathy Nunes, Irene; Zanetta, Lucia; Higgins, Rosemary D.; Shamamian, Peter; Goff, Stephen P. 2001 Articles BiochemistryOphthalmologyMedicine
44. Biomolecular NMR spectroscopy: Application to the study of the piRNA-pathway protein GTSF1, and backbone and side-chain spin relaxation methods development O'Brien, Paul 2019 Theses BiophysicsBiochemistryNuclear magnetic resonance spectroscopyProteins--StructureMolecular dynamics
45. Atf5 Links Olfactory Receptor Induced Stress Response to Proper Neuronal Function Kahiapo, Jerome Keoki 2020 Theses CytologyBiochemistryMolecular biologyOlfactory receptor genesSmellSensory neuronsMammals
46. Astrocyte pathology and the absence of non-cell autonomy in an induced pluripotent stem cell model of TDP-43 proteinopathy Serio, Andrea; Bilican, Bilada; Barmada, Sami J.; Ando, Dale Michael; Zhao, Chen; Siller, Rick; Burr, Karen; Haghi, Ghazal; Story, David; Nishimura, Agnes Lumi; Carrasco, Monica A.; Phatnani, Hemali P.; Shum, Carole; Wilmut, Ian; Maniatis, Tom; Shaw, Christopher E.; Finkbeiner, Steven; Chandran, Siddharthan 2013 Articles NeurosciencesBiochemistry
47. An Analysis of the Essential Chromatin Factor Zinc Finger Protein 1 (ZFP-1), and a Study of the Involvement of RNAi factors in Histone Processing in Caenorabditis Elegans Anastasiades Avgousti, Daphne Christina 2012 Theses BiochemistryBiophysicsCaenorhabditis elegansChromatinHistonesRNANucleosomes
48. A Kazal-Type Serine Protease Inhibitor from the Defense Gland Secretion of the Subterranean Termite Coptotermes formosanus Shiraki Negulescu, Horia; Guo, Youzhong; Garner, Thomas P.; Goodwin, Octavia Y.; Henderson, Gregg; Laine, Roger A.; Macnaughtan, Megan A. 2015 Articles Proteins--StructureProteins--SecretionRhinotermitidaeAmino acid sequenceProtease inhibitorsFormosan subterranean termiteBiochemistryEntomology
49. Activation of GTP hydrolysis in mRNA-tRNA translocation by elongation factor G Li, Wen; Liu, Zheng; Koripella, Ravi Kiran; Langlois, Robert; Sanyal, Suparna; Frank, Joachim 2015 Articles HydrolysisRibosomesGuanosine triphosphataseMolecular biologyBiochemistry
50. Accurate proteome-wide protein quantification from high-resolution 15N mass spectra Kryglyak, Leonid; Singh, Mona; Perlman, David H.; Tavazoie, Saeed; Caudy, Amy A.; Ruse, Christian; Amini, Sasan; Bloom, Joshua S.; Khan, Zia 2011 Articles BiochemistryMolecular biology