1. Using interspecies biological networks to guide drug therapy Jacunski, Alexandra 2017 Theses BioinformaticsCombination drug therapyDrug interactions
2. Transformer Models for Clinical Target Prediction using Pathology Report Text Kefeli, Jenna 2024 Theses BioinformaticsMedical records--Data processingDiagnosisPathologyNosology
3. Transcriptional States and microRNA Regulation of Adult Neural Stem Cells DeLeo, Annina 2015 Theses Molecular biologyNeurosciencesBioinformatics
4. The itaconate-driven immunometabolic response to S. aureus promotes persistent lung infection Tomlinson, Kira Leigh 2023 Theses MicrobiologyImmunologyBioinformaticsStaphylococcus aureus infectionsBiofilmsGlycolysisPneumoniaNeutrophils--Immunology
5. Systems-Level Approaches to Understanding Protein Synthesis Metz, Jordan Benjamin 2022 Theses BiologyComputer scienceBioinformaticsNucleotide sequenceRibosomesProteins--Synthesis--RegulationRNA-protein interactionsAnimal models in research
6. Systematically Mapping the Epigenetic Context Dependence of Transcription Factor Binding Kribelbauer, Judith Franziska 2018 Theses BiochemistryBioinformaticsBiophysicsTranscription factorsGene regulatory networksEpigenetics
7. Spatial and genomic analysis of the glioblastoma tumor microenvironment Chen, Andrew 2020 Theses BiologyBioinformaticsGlioblastoma multiformeBrain--Cancer--ResearchCancer--Immunotherapy--EvaluationMacrophages--Research
8. Regulatory logic of cellular diversity in the nervous system Closser, Michael Edward 2018 Theses Molecular biologyNeurosciencesBioinformaticsNervous systemGene expressionCellular control mechanisms
9. Regulation of splicing networks in neurodevelopment Weyn-Vanhentenryck, Sabastien Matthieu 2018 Theses BioinformaticsNeurosciencesRNA splicingRNA-protein interactions
10. Quantitative Approaches to the Genomics of Clonal Evolution Zairis, Sakellarios 2018 Theses GeneticsBioinformaticsMathematicsGenomicsClones (Plants)Evolution (Biology)
11. Probabilistic Reconstruction and Comparative Systems Biology of Microbial Metabolism Plata Caviedes, German 2013 Theses MicrobiologyBioinformaticsEvolution (Biology)BacteriologyPhenotypeGene expression
12. Prediction of Human Gut Bacterial Secreted Proteins and their Interactions with Human Colonic Proteins Velez-Cortes, Florencia 2023 Theses BioinformaticsIntestines--MicrobiologyDigestive organs--BacteriologyBacteriology
13. New Tools for Understanding and Engineering Complex Microbial Communities Sheth, Ravi Uday 2019 Theses BiologyBioinformaticsMicroorganismsMicrobial ecology--Technique
14. Molecular and genetic effect of coding variants in human Zhao, Yige 2024 Theses GeneticsHuman genetics--VariationBioinformaticsHuman genomeAllelomorphismMachine learningAutism--Research
15. Mind the developmental gap: Identifying adverse drug effects across childhood to evaluate biological mechanisms from growth and development Giangreco, Nicholas Paul 2022 Theses BioinformaticsDevelopmental biologyChild developmentDrugs--Safety measuresDrugs--ToxicologyMedical statistics
16. Investigating the utility of exome sequencing for kidney disease Groopman, Emily 2019 Theses GeneticsBioinformaticsMedicineKidneys--DiseasesExomes
17. Integration of Functional Genomic Data in Genetic Analysis Chen, Siying 2021 Theses BioinformaticsMedical genetics--ResearchHuman genomeEpigeneticsAutism spectrum disorders--Genetic aspects
18. Identifying and Targeting Master Regulators of Drug Resistance in Lung Adenocarcinoma through Network Analysis of Tumor Transcriptomic Data Griffin, Aaron Timothy 2023 Theses BioinformaticsBiology--ClassificationStatisticsBiochemical markersLungs--CancerAdenocarcinomaDrug resistance in cancer cellsMachine learning--Industrial applicationsAmerican Society of Clinical OncologyMemorial Sloan-Kettering Cancer Center
19. Genomic and machine-learning analysis of germline variants in cancer Madubata, Chioma 2018 Theses BioinformaticsCytologyGeneticsMachine learningGerm cellsCancer
20. Genetics of ABCA4-associated Diseases and Retinitis Pigmentosa Xie, Yajing 2016 Theses Retinitis pigmentosaRetinitis pigmentosa--Genetic aspectsMedical geneticsRetinal degenerationGeneticsBioinformatics