1. Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data Greenfeld, Max; van de Meent, Jan-Willem; Pavlichin, Dmitri S.; Mabuchi, Hideo; Wiggins, Chris H.; Gonzalez Jr., Ruben L.; Herschlag, Daniel 2015 Articles Computer filesBioinformatics
2. Time-dependent information transmission in a model regulatory circuit Mancini, F.; Wiggins, Chris H.; Marsili, M.; Walczak, Aleksandra. M. 2013 Articles MathematicsBioinformatics
3. Graphical models for inferring single molecule dynamics Fei, Jingyi; Gonzalez Jr., Ruben L.; Wiggins, Chris H.; Bronson, Jonathan; Hofman, Jake 2010 Articles BioinformaticsBiophysics
4. Spectral solutions to stochastic models of gene expression with bursts and regulation Mugler, Andrew; Walczak, Aleksandra M.; Wiggins, Chris H. 2009 Articles MathematicsBioinformatics
5. A classification-based framework for predicting and analyzing gene regulatory response Kundaje, Anshul; Middendorf, Manuel; Wiggins, Chris H.; Shah, Mihir; Freund, Yoav; Leslie, Christina 2006 Articles BioinformaticsGenetics
6. ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context Margolin, Adam A.; Nemenman, Ilya; Basso, Katia; Wiggins, Chris H.; Stolovitzky, Gustavo Alejandro; Favera, Riccardo Dalla; Califano, Andrea 2006 Articles BioinformaticsCytology
7. Dynamics of semiflexible polymers in a flow field Munk, Tobias; Hallatschek, Oskar; Wiggins, Chris H.; Frey, Erwin 2006 Articles MathematicsBioinformatics
8. Discriminative topological features reveal biological network mechanisms Middendorf, Manuel; Ziv, Etay; Adams, Carter; Hom, Jennifer C.; Koytcheff, Robin; Levovitz, Chaya; Woods, Gregory; Chen, Linda; Wiggins, Chris H. 2004 Articles BioinformaticsGeneticsBiological models