1. Regularized EM algorithm for sparse parameter estimation in nonlinear dynamic systems with application to gene regulatory network inference Jia, Bin; Wang, Xiaodong 2014 Articles Gene regulatory networksExpectation-maximization algorithmsBioinformatics
2. Reconstruction of novel transcription factor regulons through inference of their binding sites Elmas, Abdulkadir; Wang, Xiaodong; Samoilov, Michael S. 2015 Articles Comparative genomicsBioinformaticsGenomics--Data processingComputational biologyTranscription factorsElectrical engineeringGeneticsMolecular biologyMathematics
3. Protein Secondary Structure Prediction using Deterministic Sequential Sampling Liang, Kuo-ching; Wang, Xiaodong 2011 Articles Bioinformatics
4. Maximum parsimony xor haplotyping by sparse dictionary selection Elmas, Abdulkadir; Jajamovich, Guido H.; Wang, Xiaodong 2013 Articles Biometry--ResearchBioinformatics--MethodologyGenomics--Data processingGenetics—ResearchGeneticsBioinformaticsMolecular biology
5. Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA Jajamovich, Guido H.; Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2013 Articles BiometryDNA--Data processingGenetics—ResearchBioinformaticsGeneticsBiology
6. Inference of gene regulatory networks from genome-wide knockout fitness data Wang, Liming; Wang, Xiaodong; Arkin, Adam P.; Samoilov, Michael S. 2012 Articles Bioinformatics
7. Gene regulatory network inference by point-based Gaussian approximation filters incorporating the prior information Jia, Bin; Wang, Xiaodong 2013 Articles Gaussian distributionIterative methods (Mathematics)Kalman filteringGene regulatory networksBioinformaticsBiometryMathematics
8. Gene Prediction Using Multinomial Probit Regression with Bayesian Gene Selection Zhou, Xiaobo; Wang, Xiaodong; Dougherty, Edward R 2004 Articles GeneticsBioinformatics
9. Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2012 Articles GeneticsBioinformatics
10. Bayesian Multiple-Instance Motif Discovery with BAMBI: Inference of Recombinase and Transcription Factor Binding Sites Jajamovich, Guido H.; Wang, Xiaodong; Arkin, Adam P.; Samoilov, Michael S. 2011 Articles Bioinformatics