1. Inference of Ancestral Recombination Graphs through Topological Data Analysis Camara, Pablo Gonzales; Levine, Arnold J.; Rabadan, Raul 2016 Articles Topology--Data processingEvolution--Mathematical modelsPhylogenyBioinformatics
2. Data-driven discovery of seasonally linked diseases from an Electronic Health Records system Melamed, Rachel; Khiabanian, Hossein; Rabadan, Raul 2014 Articles Diseases--Seasonal variationsBioinformatics
3. Transcriptome reconstruction and annotation of cynomolgus and African green monkey Lee, Albert Kim; Khiabanian, Hossein; Kugelman, Jeffrey; Elliott, Oliver T.; Nagle, Elyse; Yu, Guo-Yun; Warren, Travis; Palacios, Gustavo; Rabadan, Raul 2014 Articles BioinformaticsGenetics
4. Viral diversity and clonal evolution from unphased genomic data Khiabanian, Hossein; Carpenter, Zachary; Kugelman, Jeffrey; Chan, Joseph; Trifonov, Vladimir; Nagle, Elyse; Warren, Travis; Iversen, Patrick; Bavari, Sina; Palacios, Gustavo; Rabadan, Raul 2014 Articles GenomicsCytologyBioinformatics
5. MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples Rabadan, Raul; Trifonov, Vladimir; Pasqualucci, Laura; Favera, Riccardo Dalla 2013 Articles BioinformaticsCytology
6. Quantifying Pathogen Surveillance Using Temporal Genomic Data Chan, Joseph Minhow; Rabadan, Raul 2013 Articles BioinformaticsMolecular biologyCommunicable diseasesGenetics
7. SAVI: a statistical algorithm for variant frequency identification Trifonov, Vladimir; Pasqualucci, Laura; Tiacci, Enrico; Falini, Brunangelo; Rabadan, Raul 2013 Articles Bayesian statistical decision theorySequence alignment (Bioinformatics)Gene frequency--Statistical methodsGeneticsBioinformaticsBiometry
8. How many neutrophils are enough (redux, redux)? Silverstein, Samuel C.; Rabadan, Raul 2012 Articles NeutrophilsMedicine--ResearchNeutropeniaBioinformaticsMedicineMedical sciences
9. Fractal-like Distributions over the Rational Numbers in High-throughput Biological and Clinical Data Trifonov, Vladimir; Pasqualucci, Laura; Dalla-Favera, Riccardo; Rabadan, Raul 2011 Articles Computational biologyBioinformaticsStatistics
10. Understanding the Origins of a Pandemic Virus Hernandez, Carlos Xavier; Chan, Joseph M.; Khiabanian, Hossein; Rabadan, Raul 2011 Articles Public healthBioinformatics