1. Accurate and sensitive quantification of protein-DNA binding affinity Rastogi, Chaitanya; Rube, Hans Tomas; Kribelbauer, Judith Franziska; Crocker, Justin; Loker, Ryan Edmund; Martini, Gabriella D.; Laptenko, Oleg; Freed-Pastor, William Allen; Prives, Carol L.; Stern, David L.; Mann, Richard S.; Bussemaker, Harmen J. 2018 Articles Transcription factorsDNA-protein interactionsProtein bindingProbabilities--Mathematical models
2. Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding Rao, Satyanarayan; Chiu, Tsu-Pei; Kribelbauer, Judith F.; Mann, Richard S.; Bussemaker, Harmen J.; Rohs, Remo 2018 Articles DNA--MethylationEpigeneticsDNA-binding proteinsSystems biology
3. Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes Kribelbauer, Judith F.; Laptenko, Oleg; Chen, Siying; Martini, Gabriella D.; Freed-Pastor, William Allen; Prives, Carol L.; Mann, Richard S.; Bussemaker, Harmen J. 2017 Articles DNA--MethylationTranscription factorsGenetic regulationDNA-protein interactionsEpigenetics