1. A sequential Monte Carlo algorithm for inference of subclonal structure in cancer Ogundijo, Oyetunji Enoch; Zhu, Kaiyi; Wang, Xiaodong; Anastassiou, Dimitris 2019 Articles Tumors--Growth--Mathematical modelsMonte Carlo methodOncology
2. Meta-analysis of expression and methylation signatures indicates a stress-related epigenetic mechanism in multiple neuropsychiatric disorders Zhu, Kaiyi; Ou Yang, Tai-Hsien; Dorie, Vincent Joseph; Zheng, Tian; Anastassiou, Dimitris 2019 Articles Neurobehavioral disordersPathologyEpigeneticsMethylationStress (Psychology)--Physiological aspectsSystems biology
3. Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants Elmas, Abdulkadir; Ou Yang, Tai-Hsien; Wang, Xiaodong; Anastassiou, Dimitris 2016 Articles Genomics--Data processingHuman genetics--Data processingChromosomesGene mappingSingle nucleotide polymorphismsGeneticsBiology--Classification
4. A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2014 Articles Computational biologyGenomics--Data processingBioinformatics
5. Biomolecular Events in Cancer Revealed by Attractor Metagenes Cheng, Wei-Yi; Ou Yang, Tai-Hsien; Anastassiou, Dimitris 2013 Articles Gene expressionChromosomesBreast--CancerBiochemistry
6. Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA Jajamovich, Guido H.; Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2013 Articles BiometryDNA--Data processingGenetics—ResearchBioinformaticsGeneticsBiology
7. Notch and VEGF pathways play distinct but complementary roles in tumor angiogenesis Hernandez, Sonia; Banerjee, Debarshi; Garcia, Alejandro; Kangsamaksin, Thaned; Cheng, Wei-Yi; Anastassiou, Dimitris; Funahashi, Yasuhiro; Kadenhe-Chiweshe, Angela; Shawber, Carrie; Kitajewski, Jan K.; Kandel, Jessica; Yamashiro, Darrell J. 2013 Articles NeuroblastomaNeovascularizationBevacizumabVascular endothelial growth factorsMolecular biologyOncologyMedicine
8. Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data Iliadis, Alexandros; Anastassiou, Dimitris; Wang, Xiaodong 2012 Articles GeneticsBioinformatics
9. Human cancer cells express Slug-based epithelial-mesenchymal transition gene expression signature obtained in vivo Anastassiou, Dimitris; Rumjantseva, Viktoria; Cheng, Weiyi; Huang, Jianzhong; Canoll, Peter D.; Yamashiro, Darrell; Kandel, Jessica J. 2011 Articles Epithelial cellsMesenchymal stem cellsCancer invasivenessCancer cells--MotilityBiomechanicsOncologyMolecular biology
10. A haplotype inference algorithm for trios based on deterministic sampling Wang, Xiaodong; Anastassiou, Dimitris; Iliandis, Alexandros; Watkinson, John 2010 Articles GeneticsBioinformatics
11. Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1 Kim, Hoon; Watkinson, John; Varadan, Vinay; Anastassiou, Dimitris 2010 Articles GeneticsCytology
12. Identification of gene interactions associated with disease from gene expression data using synergy networks Watkinson, John; Wang, Xiaodong; Zheng, Tian; Anastassiou, Dimitris 2008 Articles GeneticsBiometry
13. Variable window binding for mutually exclusive alternative splicing Anastassiou, Dimitris; Liu, Hairuo; Varadan, Vinay 2006 Articles RNA splicingLocus of controlExons (Genetics)Messenger RNAGeneticsBioinformatics
14. Spectrogram Analysis of Genomes Sussillo, David; Kundaje, Anshul; Anastassiou, Dimitris 2004 Articles Genetics